Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I9190_RS01110 Genome accession   NZ_CP066121
Coordinates   251813..252397 (+) Length   194 a.a.
NCBI ID   WP_004826134.1    Uniprot ID   A0A0A8TNZ3
Organism   Acinetobacter bereziniae strain GD0320     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 246813..257397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS01095 (I9190_01095) tenA 248266..248937 (-) 672 WP_005035207.1 thiaminase II -
  I9190_RS01100 (I9190_01100) - 249175..250257 (+) 1083 WP_171428649.1 DUF475 domain-containing protein -
  I9190_RS01105 (I9190_01105) - 250397..251761 (+) 1365 WP_009585507.1 MFS transporter -
  I9190_RS01110 (I9190_01110) ssb 251813..252397 (+) 585 WP_004826134.1 single-stranded DNA-binding protein Machinery gene
  I9190_RS01115 (I9190_01115) - 252545..253450 (-) 906 WP_151778964.1 DMT family transporter -
  I9190_RS01120 (I9190_01120) - 253633..254508 (+) 876 WP_058967350.1 helix-turn-helix domain-containing protein -
  I9190_RS01125 (I9190_01125) - 254678..255013 (-) 336 WP_042087865.1 hypothetical protein -
  I9190_RS01130 (I9190_01130) ahpC 255214..255777 (+) 564 WP_005035218.1 alkyl hydroperoxide reductase subunit C -
  I9190_RS01135 (I9190_01135) - 255994..257358 (-) 1365 WP_151780727.1 OprD family outer membrane porin -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21381.08 Da        Isoelectric Point: 6.4839

>NTDB_id=517502 I9190_RS01110 WP_004826134.1 251813..252397(+) (ssb) [Acinetobacter bereziniae strain GD0320]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEAGENGGYNQPRFNNNQQGGFNNNQGGGYNQGNQGGYGNAAPQGG
YGNGGNNVNQGFQSPKPQQAPATAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=517502 I9190_RS01110 WP_004826134.1 251813..252397(+) (ssb) [Acinetobacter bereziniae strain GD0320]
ATGCGTGGTGTAAATAAAGTTATTTTAGTTGGTACTTTGGGTCGTGATCCTGAGACGAAAACATTCCCAAATGGGGGGTC
TCTCACTCAATTTTCAATAGCGACCAGTGAATCTTGGACAGATAAAAATTCCGGAGAAAGAAAAGAACAAACGGAATGGC
ATCGTATTGTGTTGCATAACCGCTTAGGTGAAATTGCACAGCAATATTTACGTAAAGGCTCGAAAGTTTATATTGAGGGC
TCTTTACGTACACGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAGAT
GTTGGATAACAACCGTCAGCAAGGTGAAGCAGGTGAAAACGGGGGCTATAACCAACCACGTTTCAATAACAATCAACAAG
GTGGTTTTAATAACAACCAAGGTGGTGGTTATAATCAAGGCAACCAAGGTGGCTATGGTAATGCAGCTCCACAAGGTGGT
TATGGCAATGGTGGAAACAATGTTAATCAGGGTTTCCAGTCGCCTAAACCACAACAAGCGCCTGCAACTGCTCCAGCAGA
TTTAGATGATGATCTGCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TNZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.98

100

0.536
  ssb Vibrio cholerae strain A1552

44.776

100

0.464
  ssb Neisseria gonorrhoeae MS11

38.889

100

0.397
  ssb Neisseria meningitidis MC58

38.889

100

0.397