Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   I6I02_RS03630 Genome accession   NZ_CP066093
Coordinates   830131..831546 (+) Length   471 a.a.
NCBI ID   WP_198463843.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 825131..836546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS03605 (I6I02_03605) - 825582..826154 (-) 573 WP_022496698.1 ECF transporter S component -
  I6I02_RS03610 (I6I02_03610) coaC 826183..826728 (-) 546 WP_198463840.1 phosphopantothenoylcysteine decarboxylase -
  I6I02_RS03615 (I6I02_03615) - 826721..827404 (-) 684 WP_198463841.1 phosphopantothenate--cysteine ligase -
  I6I02_RS03620 (I6I02_03620) - 827598..829268 (+) 1671 WP_198463842.1 formate--tetrahydrofolate ligase -
  I6I02_RS03625 (I6I02_03625) ciaR 829467..830141 (+) 675 WP_002891134.1 response regulator transcription factor Regulator
  I6I02_RS03630 (I6I02_03630) ciaH 830131..831546 (+) 1416 WP_198463843.1 sensor histidine kinase Regulator
  I6I02_RS03635 (I6I02_03635) rpsT 831624..831860 (-) 237 WP_004182129.1 30S ribosomal protein S20 -
  I6I02_RS03640 (I6I02_03640) coaA 831930..832850 (-) 921 WP_013990467.1 type I pantothenate kinase -
  I6I02_RS03645 (I6I02_03645) - 832963..833553 (+) 591 WP_013990468.1 class I SAM-dependent methyltransferase -
  I6I02_RS03650 (I6I02_03650) - 833550..834827 (+) 1278 WP_013990469.1 pyrimidine-nucleoside phosphorylase -
  I6I02_RS03655 (I6I02_03655) deoC 834861..835523 (+) 663 WP_013990470.1 deoxyribose-phosphate aldolase -
  I6I02_RS03660 (I6I02_03660) - 835510..835908 (+) 399 WP_037600754.1 cytidine deaminase -

Sequence


Protein


Download         Length: 471 a.a.        Molecular weight: 53486.26 Da        Isoelectric Point: 8.7661

>NTDB_id=517354 I6I02_RS03630 WP_198463843.1 830131..831546(+) (ciaH) [Streptococcus salivarius strain FDAARGOS_1045]
MLTKFFNYLFRRMKSEGFKSFIHFFATFSGIFLIMTVMILQILSYGVYSNVDSSLKMAATKTNSYLEMEMLKRELFLTSE
VDQNNTTTIYQAYDTKGSTDETPDSSGSKKESKKKSKMEDAPHDLSVAANTSVLVLDKNGKVLNVVDKFSSLSNLPIDKN
NIDVISKGSAQNYFDQTEKYRLITEKVDNSLYPDAKYLVIAINTTQLEEATERYVKLIVIMMSFFWLLSVAASMYLAKWS
RRPIQESLEKQKAFVENASHELRTPLAVIQNRLEVLFRKPESTILDNSENIASSLDEVRNMRLLTTNLLNLARRDDGIKP
EIETLEPAFFDTVFTNYAMIAEENEKGFTAQNQVGRPIQTDKTLLKQLMTILFDNAIKYTEDDGHVTFTVRTNDRHLYIS
VADNGPGISDSDKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIVLALKGTIVVKDNQPKGTIFEVKITGV

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=517354 I6I02_RS03630 WP_198463843.1 830131..831546(+) (ciaH) [Streptococcus salivarius strain FDAARGOS_1045]
ATGCTGACTAAATTTTTCAATTATCTCTTTAGGAGAATGAAGTCAGAAGGATTTAAGTCTTTCATTCATTTCTTTGCGAC
TTTTTCTGGTATTTTCCTTATCATGACAGTCATGATTTTGCAGATTCTGAGTTACGGTGTTTATTCCAATGTGGACTCTA
GTCTGAAAATGGCAGCGACTAAGACCAATTCTTATTTAGAAATGGAAATGCTAAAACGGGAACTTTTTCTGACCTCTGAG
GTAGATCAAAATAATACGACAACCATTTATCAGGCTTATGATACTAAAGGGTCGACAGATGAAACACCTGACTCGAGTGG
CTCTAAAAAAGAATCTAAGAAGAAATCAAAGATGGAAGATGCCCCTCACGATTTATCTGTTGCGGCGAATACCAGTGTCT
TAGTGCTTGATAAGAATGGAAAAGTCCTCAATGTCGTTGACAAATTTTCTAGCTTATCCAATTTACCAATAGACAAAAAT
AACATTGATGTTATCAGCAAGGGAAGCGCTCAGAATTATTTCGATCAAACGGAAAAGTACCGTCTGATTACTGAGAAAGT
AGACAATAGCCTCTATCCTGATGCTAAGTACCTTGTTATTGCGATTAATACAACTCAATTGGAAGAAGCTACTGAACGTT
ATGTTAAGCTCATTGTCATCATGATGAGTTTCTTCTGGCTCTTATCTGTTGCGGCTAGTATGTATTTGGCTAAGTGGTCA
AGACGTCCTATCCAGGAAAGCTTGGAGAAGCAGAAGGCTTTTGTTGAAAATGCTAGTCATGAGTTACGGACACCGCTTGC
TGTGATTCAAAACAGGTTAGAAGTTCTTTTCCGCAAGCCTGAGAGTACTATTTTAGATAATTCAGAGAATATTGCATCAA
GTCTTGATGAAGTACGTAATATGCGTCTGTTGACGACTAATCTCTTGAACTTGGCTCGTCGTGACGATGGTATTAAACCA
GAAATCGAAACCTTAGAACCTGCTTTCTTTGATACAGTATTTACCAACTATGCCATGATTGCAGAAGAAAATGAGAAAGG
TTTCACGGCTCAAAACCAAGTTGGTCGTCCAATCCAGACTGATAAAACGTTATTGAAACAGTTAATGACCATCTTATTTG
ATAATGCTATTAAATATACGGAAGATGACGGACATGTTACCTTTACTGTTCGCACTAATGACCGCCATCTTTATATTTCT
GTAGCTGATAATGGTCCTGGGATATCAGATAGTGATAAGAAAAAAATCTTTGATCGATTTTATCGCGTAGATAAGGCTAG
AACCAGACAAAAAGGTGGGTTTGGACTTGGCTTATCCCTAGCGCAACAAATTGTTTTAGCTCTTAAAGGAACAATTGTTG
TTAAAGATAATCAACCAAAGGGAACGATTTTTGAAGTTAAGATTACCGGAGTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

56.087

97.665

0.548

  ciaH Streptococcus pneumoniae Rx1

50

98.514

0.493

  ciaH Streptococcus pneumoniae D39

50

98.514

0.493

  ciaH Streptococcus pneumoniae R6

50

98.514

0.493

  ciaH Streptococcus pneumoniae TIGR4

50

98.514

0.493