Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6I02_RS01740 Genome accession   NZ_CP066093
Coordinates   348990..349685 (+) Length   231 a.a.
NCBI ID   WP_198463684.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343990..354685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS01715 (I6I02_01715) - 344846..345961 (+) 1116 WP_198463681.1 hypothetical protein -
  I6I02_RS01720 (I6I02_01720) - 345974..346243 (-) 270 WP_008535312.1 GIY-YIG nuclease family protein -
  I6I02_RS01725 (I6I02_01725) - 346247..347011 (-) 765 WP_073950335.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  I6I02_RS01730 (I6I02_01730) - 347061..347996 (-) 936 WP_198463682.1 polysaccharide deacetylase family protein -
  I6I02_RS01735 (I6I02_01735) - 348127..348882 (+) 756 WP_198463683.1 lysophospholipid acyltransferase family protein -
  I6I02_RS01740 (I6I02_01740) comEA 348990..349685 (+) 696 WP_198463684.1 helix-hairpin-helix domain-containing protein Machinery gene
  I6I02_RS01745 (I6I02_01745) comEC/celB 349675..351915 (+) 2241 WP_198463685.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I6I02_RS01750 (I6I02_01750) - 352001..353263 (+) 1263 WP_198463686.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6I02_RS01755 (I6I02_01755) - 353329..353874 (+) 546 WP_022496136.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24580.60 Da        Isoelectric Point: 4.7637

>NTDB_id=517342 I6I02_RS01740 WP_198463684.1 348990..349685(+) (comEA) [Streptococcus salivarius strain FDAARGOS_1045]
MKEKILAYIKDNRLFVSVIAVLMVFFCFFLWMTCGAGNSMEAETSYTDVTTLSTSSSKEGAKSLTEASSQSKTEESEKDK
SKVTVDVKGAVVKPGVYTLKAGTRVTDAIKTAGGMTEDADAKSVNLAASLSDEEVIYVATKDENLSVLGQSGTSQVSDKG
GQTNAKDGKINLNTATAEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESIYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=517342 I6I02_RS01740 WP_198463684.1 348990..349685(+) (comEA) [Streptococcus salivarius strain FDAARGOS_1045]
GTGAAGGAAAAGATTCTAGCCTATATCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGTTTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAACATTGTCAA
CCTCCTCATCCAAAGAAGGGGCAAAATCACTTACTGAAGCGTCTTCTCAGTCAAAGACTGAAGAAAGTGAAAAGGATAAG
TCAAAAGTAACAGTGGATGTTAAGGGAGCCGTAGTCAAGCCAGGGGTTTATACGCTAAAAGCGGGCACTAGAGTGACTGA
CGCCATCAAAACCGCTGGGGGAATGACCGAGGATGCGGATGCTAAGAGTGTTAATTTAGCCGCAAGCTTGTCAGACGAAG
AGGTTATCTATGTGGCAACTAAGGATGAAAACCTTTCTGTCCTTGGTCAATCAGGAACTAGTCAGGTGTCTGACAAAGGA
GGGCAAACTAATGCTAAGGATGGGAAAATTAACTTAAATACAGCGACTGCAGAGGAATTGCAAACCATTTCTGGAATTGG
AGCTAAGCGAGCAGAGGATATCATCGCCTATCGCGAAAGTCATGGTGGCTTTCAGTCCGTAGATGACCTGAAAAATGTTT
CAGGAATTGGTGATAAAACGTTAGATAAAATCAGAGAGTCCATCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(168-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

88.312

100

0.883
  comEA/celA/cilE Streptococcus mitis SK321

41.304

99.567

0.411
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

41.048

99.134

0.407
  comEA Latilactobacillus sakei subsp. sakei 23K

34.855

100

0.364