Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H43_RS08265 Genome accession   NZ_CP066092
Coordinates   1793774..1794352 (+) Length   192 a.a.
NCBI ID   WP_033116044.1    Uniprot ID   A0AAQ0J003
Organism   Aeromonas jandaei strain FDAARGOS_986     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1788774..1799352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H43_RS08255 (I6H43_08255) - 1788790..1790463 (-) 1674 WP_042032193.1 diguanylate cyclase -
  I6H43_RS08260 (I6H43_08260) uvrA 1790575..1793403 (-) 2829 WP_042032194.1 excinuclease ABC subunit UvrA -
  I6H43_RS08265 (I6H43_08265) ssb 1793774..1794352 (+) 579 WP_033116044.1 single-stranded DNA-binding protein Machinery gene
  I6H43_RS21390 - 1794581..1794706 (-) 126 WP_019445191.1 hypothetical protein -
  I6H43_RS08270 (I6H43_08270) - 1795173..1796075 (+) 903 WP_042032195.1 cation diffusion facilitator family transporter -
  I6H43_RS08275 (I6H43_08275) yjbD 1796219..1796503 (+) 285 WP_042032196.1 DUF3811 domain-containing protein -
  I6H43_RS08280 (I6H43_08280) - 1797006..1797215 (+) 210 WP_156854046.1 cold-shock protein -
  I6H43_RS08285 (I6H43_08285) - 1797488..1798846 (+) 1359 WP_042032197.1 NCS2 family permease -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21259.77 Da        Isoelectric Point: 5.9301

>NTDB_id=517305 I6H43_RS08265 WP_033116044.1 1793774..1794352(+) (ssb) [Aeromonas jandaei strain FDAARGOS_986]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQQGGWGQPQQAMQQPMNQQRPAAAPQQNMQ
QQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=517305 I6H43_RS08265 WP_033116044.1 1793774..1794352(+) (ssb) [Aeromonas jandaei strain FDAARGOS_986]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAGGTTTATGTC
GAAGGCAAACTGCAGACTCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACGGAAGTACTGGTCGACAGCTT
CACCGGTGTCATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAGCAAGGTG
GCTGGGGTCAACCGCAGCAAGCCATGCAGCAGCCGATGAACCAGCAGCGTCCGGCCGCCGCTCCGCAGCAAAACATGCAG
CAGCAGGGTGGCTACGGCCGTCCGGCTCAGCAGCCCCAGTCTGCCCCGCCGGTCTACAACGAGCCGCCGATGGATTTCGA
CGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.192

100

0.714
  ssb Glaesserella parasuis strain SC1401

54.974

99.479

0.547
  ssb Neisseria gonorrhoeae MS11

47.619

98.438

0.469
  ssb Neisseria meningitidis MC58

47.09

98.438

0.464