Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I06_RS09670 Genome accession   NZ_CP066075
Coordinates   2215194..2215730 (-) Length   178 a.a.
NCBI ID   WP_042328837.1    Uniprot ID   A0A7T4MZS3
Organism   Paraburkholderia ginsengisoli strain FDAARGOS_1049     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2210194..2220730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I06_RS09665 (I6I06_09665) - 2210388..2213708 (-) 3321 WP_232624316.1 YadA-like family protein -
  I6I06_RS29880 - 2213970..2214053 (-) 84 Protein_1903 ESPR domain-containing protein -
  I6I06_RS09670 (I6I06_09670) ssb 2215194..2215730 (-) 537 WP_042328837.1 single-stranded DNA-binding protein Machinery gene
  I6I06_RS09675 (I6I06_09675) - 2215880..2217067 (-) 1188 WP_167335678.1 MFS transporter -
  I6I06_RS09680 (I6I06_09680) uvrA 2217413..2220286 (+) 2874 WP_042328834.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18509.33 Da        Isoelectric Point: 5.3552

>NTDB_id=517216 I6I06_RS09670 WP_042328837.1 2215194..2215730(-) (ssb) [Paraburkholderia ginsengisoli strain FDAARGOS_1049]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEMKEATEWHRVSFFGRLAEIVSEYLKKGSSVYLEG
RIRTRKWQAQDGTDRYSTEIVAEQMQMLGGRGGSSMGGGDEGGGYSRGEPSERSGGGGRAMSGGGASRGGSGSGGGGSSR
PSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=517216 I6I06_RS09670 WP_042328837.1 2215194..2215730(-) (ssb) [Paraburkholderia ginsengisoli strain FDAARGOS_1049]
ATGGCATCCGTGAACAAGGTCATTCTCGTCGGCAATCTCGGAGCCGATCCGGAAGTCCGCTATCTTCCGAGCGGCGACGC
AGTGGCGAACATCCGCCTTGCGACGACGGACCGGTACAAGGACAAGGCGTCCGGCGAGATGAAGGAAGCCACCGAATGGC
ACCGCGTGTCGTTCTTCGGCCGTCTCGCGGAAATCGTTTCGGAATATCTGAAGAAGGGCTCGTCGGTGTACCTGGAAGGG
CGCATCCGCACCCGTAAGTGGCAGGCGCAGGACGGCACCGATCGTTACTCGACCGAAATCGTCGCCGAGCAGATGCAAAT
GCTGGGCGGCCGCGGCGGCTCCTCGATGGGCGGCGGCGACGAAGGCGGCGGTTATAGCCGCGGTGAGCCGTCGGAGCGTA
GCGGCGGTGGTGGTCGGGCAATGTCGGGCGGCGGCGCTTCGCGTGGCGGCAGCGGCAGTGGTGGCGGCGGTTCCAGCCGT
CCGAGCGCGCCGGCGGGCGGCGGCTTTGATGAGATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T4MZS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.528
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.461
  ssb Neisseria gonorrhoeae MS11

45.198

99.438

0.449
  ssb Neisseria meningitidis MC58

43.75

98.876

0.433