Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H97_RS07510 Genome accession   NZ_CP066071
Coordinates   1661194..1661709 (+) Length   171 a.a.
NCBI ID   WP_004924506.1    Uniprot ID   A0A140NIZ6
Organism   Providencia stuartii strain FDAARGOS_1040     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1656194..1666709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H97_RS07495 (I6H97_07495) - 1656201..1657397 (+) 1197 WP_014656877.1 aromatic amino acid transaminase -
  I6H97_RS20780 (I6H97_07500) - 1657611..1657727 (-) 117 WP_080728253.1 transposase domain-containing protein -
  I6H97_RS07505 (I6H97_07505) uvrA 1657970..1660804 (-) 2835 WP_014656873.1 excinuclease ABC subunit UvrA -
  I6H97_RS07510 (I6H97_07510) ssb 1661194..1661709 (+) 516 WP_004924506.1 single-stranded DNA-binding protein Machinery gene
  I6H97_RS07515 (I6H97_07515) - 1662360..1664459 (+) 2100 WP_004924500.1 RecQ family ATP-dependent DNA helicase -
  I6H97_RS07520 (I6H97_07520) - 1664456..1665805 (+) 1350 WP_040132743.1 DNA-processing protein DprA -
  I6H97_RS07525 (I6H97_07525) aarP 1666288..1666695 (-) 408 WP_004924490.1 HTH-type transcriptional activator AarP -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18371.35 Da        Isoelectric Point: 4.9567

>NTDB_id=517141 I6H97_RS07510 WP_004924506.1 1661194..1661709(+) (ssb) [Providencia stuartii strain FDAARGOS_1040]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGESSGQSQGGQSGWGQPQQPAAQQFSGGGAPARSPAPAPQSSE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=517141 I6H97_RS07510 WP_004924506.1 1661194..1661709(+) (ssb) [Providencia stuartii strain FDAARGOS_1040]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACTTAGGGCAAGATCCTGAAATCCGTTACATGCCTAACGG
TGGTGCTGTTGCAAACCTGACTCTGGCAACTTCTGAAAGCTGGCGCGATAAGCAAACTGGTGAAATGCGTGAGAAAACAG
AATGGCATCGTGTCGTGATTTTCGGCAAATTAGCTGAAGTTGCTGGTGAATATCTGAAAAAAGGTTCTCAAGTCTATATT
GAAGGTTCTTTGCAGACTCGCAAATGGCAAGACCAAAGTGGTCAAGACCGTTACACCACTGAAGTTGTGGTTAACATCGG
TGGCTCAATGCAAATGTTAGGCGGTCGTGGTGGCGAATCATCAGGCCAAAGCCAAGGTGGTCAAAGCGGTTGGGGTCAGC
CTCAGCAACCAGCGGCTCAGCAATTCAGTGGTGGCGGCGCCCCAGCGCGTTCACCAGCACCTGCACCACAAAGCAGCGAA
CCACCAATGGACTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A140NIZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.33

100

0.749
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.614
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.503