Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   I6H74_RS09580 Genome accession   NZ_CP066069
Coordinates   1936604..1937311 (-) Length   235 a.a.
NCBI ID   WP_046177366.1    Uniprot ID   A0A9X9R1S2
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1931604..1942311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS09555 (I6H74_09550) pstB 1931690..1932442 (-) 753 WP_003055005.1 phosphate ABC transporter ATP-binding protein PstB -
  I6H74_RS09560 (I6H74_09555) pstA 1932444..1933259 (-) 816 WP_003055017.1 phosphate ABC transporter permease PstA -
  I6H74_RS09565 (I6H74_09560) pstC 1933252..1934115 (-) 864 WP_012766699.1 phosphate ABC transporter permease subunit PstC -
  I6H74_RS09570 (I6H74_09565) - 1934233..1935108 (-) 876 WP_003055008.1 substrate-binding domain-containing protein -
  I6H74_RS09575 (I6H74_09570) - 1935275..1936603 (-) 1329 WP_003055014.1 ATP-binding protein -
  I6H74_RS09580 (I6H74_09575) vicR 1936604..1937311 (-) 708 WP_046177366.1 response regulator transcription factor Regulator
  I6H74_RS09585 (I6H74_09580) - 1937398..1937880 (-) 483 WP_003055012.1 cupin domain-containing protein -
  I6H74_RS09590 (I6H74_09585) - 1938055..1938210 (+) 156 WP_012766695.1 SPJ_0845 family protein -
  I6H74_RS09595 (I6H74_09590) - 1938357..1939259 (+) 903 WP_115256788.1 permease -
  I6H74_RS09600 (I6H74_09595) - 1939259..1940074 (+) 816 WP_046177368.1 TIGR03943 family protein -
  I6H74_RS09605 (I6H74_09600) ftsY 1940200..1941750 (-) 1551 WP_046177369.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27404.66 Da        Isoelectric Point: 5.4397

>NTDB_id=517117 I6H74_RS09580 WP_046177366.1 1936604..1937311(-) (vicR) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MTKQILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLDGIEVCKRLRAKGIKTPIMMV
SAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTSKEQQEDDTDDFRDDYLVFGALTVYPDRHEVYKADHLLS
LTPKEFELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKAPQFIQTIRGYGYKFKEL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=517117 I6H74_RS09580 WP_046177366.1 1936604..1937311(-) (vicR) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGACAAAACAAATCTTATTAGTGGATGATGAAGAACACATTTTGAGGCTACTGGATTATCATCTCGGTAAAGAAGGGTT
TTCCACACAATTGGTAACAGATGGCCGAAAAGCATTGACATTGGCAGAAACAGAGCCTTTTGACTTTATCCTACTGGATA
TTATGTTGCCTCAGTTAGACGGCATAGAAGTGTGTAAGCGACTGAGAGCTAAAGGAATAAAAACTCCGATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGATAAGGTTTTGGCCTTGGAATTAGGAGCTGATGACTACCTGACTAAGCCTTTTAGCCC
TAGAGAATTGCTGGCGCGTGTCAAGGCTATTTTACGTCGAACCAGTAAAGAGCAGCAAGAAGATGACACAGATGATTTCA
GGGATGATTATCTGGTATTTGGGGCCCTGACCGTCTATCCAGACCGGCATGAGGTTTATAAGGCAGATCATTTATTGAGC
CTTACCCCAAAGGAATTTGAACTCTTGCTCTATCTTATGAAACATCCCAACATGACATTAACTAGGGAACGTTTACTTGA
ACGGATTTGGGGATATGATTTTGGACAAGAAACCCGTTTAGTGGATGTTCATATTGGCAAATTGAGAGATAAGATAGAGG
ATAATCCTAAAGCCCCTCAATTTATTCAAACGATTAGAGGCTATGGGTATAAGTTTAAGGAGTTATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-232)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

49.145

99.574

0.489
  micA Streptococcus pneumoniae Cp1015

47.619

98.298

0.468
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.772

100

0.421
  covR Streptococcus salivarius strain HSISS4

40.506

100

0.409