Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6I28_RS06695 Genome accession   NZ_CP066062
Coordinates   1397127..1397636 (+) Length   169 a.a.
NCBI ID   WP_002472790.1    Uniprot ID   A0A9Q4D4Y8
Organism   Staphylococcus pettenkoferi strain FDAARGOS_1071     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1392127..1402636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I28_RS06670 (I6I28_06670) - 1392809..1393684 (+) 876 WP_049405379.1 mechanosensitive ion channel family protein -
  I6I28_RS06675 (I6I28_06675) - 1393718..1393918 (+) 201 WP_002472788.1 DUF951 domain-containing protein -
  I6I28_RS06680 (I6I28_06680) ychF 1393931..1395028 (+) 1098 WP_049405377.1 redox-regulated ATPase YchF -
  I6I28_RS06685 (I6I28_06685) - 1395631..1396437 (-) 807 WP_002472751.1 GH25 family lysozyme -
  I6I28_RS06690 (I6I28_06690) rpsF 1396803..1397111 (+) 309 WP_002472759.1 30S ribosomal protein S6 -
  I6I28_RS06695 (I6I28_06695) ssbA 1397127..1397636 (+) 510 WP_002472790.1 single-stranded DNA-binding protein Machinery gene
  I6I28_RS06700 (I6I28_06700) rpsR 1397688..1397927 (+) 240 WP_049405376.1 30S ribosomal protein S18 -
  I6I28_RS06705 (I6I28_06705) - 1398312..1399292 (+) 981 WP_049405375.1 ketoacyl-ACP synthase III -
  I6I28_RS06710 (I6I28_06710) - 1399389..1399787 (+) 399 WP_049405374.1 hypothetical protein -
  I6I28_RS06715 (I6I28_06715) - 1399871..1400095 (-) 225 WP_002472778.1 hypothetical protein -
  I6I28_RS06720 (I6I28_06720) - 1400591..1401208 (+) 618 WP_002472774.1 LysE family translocator -
  I6I28_RS06725 (I6I28_06725) - 1401424..1401783 (-) 360 WP_049405373.1 hypothetical protein -
  I6I28_RS06730 (I6I28_06730) - 1402138..1402320 (-) 183 WP_002472733.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18753.34 Da        Isoelectric Point: 4.8947

>NTDB_id=517024 I6I28_RS06695 WP_002472790.1 1397127..1397636(+) (ssbA) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
MINRVVLVGRLTKDPDYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKGQNQRHQQSNNNFQDFGQGQGFGGQQSGQNTSYNNNSSNNNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=517024 I6I28_RS06695 WP_002472790.1 1397127..1397636(+) (ssbA) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
ATGATCAATAGAGTTGTTTTAGTAGGTCGCTTAACGAAAGATCCAGATTATAGAACAACACCCTCAGGCGTGAGTGTAGC
GACATTCACTCTTGCCGTCAATCGTACTTTTACCAATGCGCAAGGTGAACGCGAAGCTGATTTCATTAACTGCGTTGTCT
TCCGTAAACAAGCAGAGAATGTAAGCAACTATCTCTTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGTATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGACGTATCTTTGTGACTGAAGTGGTTTGTGACAGCGTTCAATTCCTTGAACCTAAAGG
TCAGAACCAACGTCATCAACAATCTAACAACAATTTCCAAGACTTCGGTCAAGGGCAAGGATTTGGTGGCCAACAGTCCG
GTCAAAATACGTCGTACAACAATAACTCATCAAACAATAATCAATCTGACAATCCATTTGCGAATGCGAATGGTCCGATT
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.887

100

0.627
  ssb Latilactobacillus sakei subsp. sakei 23K

56.977

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

60

65.089

0.391
  ssb Glaesserella parasuis strain SC1401

33.69

100

0.373