Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6H78_RS03840 Genome accession   NZ_CP066059
Coordinates   813071..815038 (-) Length   655 a.a.
NCBI ID   WP_198460135.1    Uniprot ID   A0A7T4M1W0
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 808071..820038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS03825 (I6H78_03825) cps4B 808593..809324 (-) 732 WP_198460132.1 capsular polysaccharide biosynthesis protein Cps4B -
  I6H78_RS03830 (I6H78_03830) - 809326..810771 (-) 1446 WP_198460133.1 LCP family protein -
  I6H78_RS03835 (I6H78_03835) amiA3 810963..812924 (-) 1962 WP_198460134.1 peptide ABC transporter substrate-binding protein Regulator
  I6H78_RS03840 (I6H78_03840) amiA 813071..815038 (-) 1968 WP_198460135.1 peptide ABC transporter substrate-binding protein Regulator
  I6H78_RS03845 (I6H78_03845) - 815325..815837 (-) 513 WP_198460136.1 GNAT family N-acetyltransferase -
  I6H78_RS03850 (I6H78_03850) - 815889..816053 (-) 165 WP_193750114.1 hypothetical protein -
  I6H78_RS03855 (I6H78_03855) - 816102..817067 (-) 966 Protein_768 hypothetical protein -
  I6H78_RS03860 (I6H78_03860) - 817652..818599 (-) 948 WP_198460137.1 AEC family transporter -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72512.00 Da        Isoelectric Point: 5.0107

>NTDB_id=516945 I6H78_RS03840 WP_198460135.1 813071..815038(-) (amiA) [Streptococcus oralis strain FDAARGOS_1021]
MKSKKWLLGAGAVLSVALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVNGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGADKIIRNSLVPHDYVQVGEKTFGGLAQAELVSYGDQWKDVT
LTDGKDTIYSPEKAKAAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKM
NITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGINRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=516945 I6H78_RS03840 WP_198460135.1 813071..815038(-) (amiA) [Streptococcus oralis strain FDAARGOS_1021]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGCGTAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAGGCGGATGCTCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGACAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTATACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATATGCTGAAGTTAAGGCCAAAGACTTTGTTACTGGGCTTAAACATGCTGCTGACGGAAAATCGGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTTAATGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTCCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTATGGTGCACCAACCCCATCGGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAATTATTGGGATAAG
GACAATGTTAAGATTGACAATATTAAACTAACTTTCTACGATGGATCAGACCAAGAATCTTTGATTCGCAGCTTTACACA
AGGAGCTTATACAACAGCTCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TTTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTATAATAAAACAGCTAAGACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGACCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGGACAAGATTATCCGTAACAGCCTAGTGCCTCATGACTACG
TTCAAGTAGGTGAAAAAACCTTTGGAGGGTTGGCTCAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAACC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCTAAAGCCAAGGAAGAATTGCAAGC
CAAGGGGGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCGGTTCAACAAACCAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTCGATGTCCTTCAAATGACCGATAATGAGAAAATG
AACATTACGTCTCAAGCCAAGGTTCCATCCCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATTCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGTATCAATCGCGGAAAAGACC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACCAGTGACCTTAAT
AAGCGTTATGAAAAATACGCCAAAGCACAAGCTTGGGTGTCTGATAGCTCGCTCTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGAACTGTACCATTCACAAAAGCATACTCTCAAGTCGGAATCAAGGGAGACCCATTTGTGTTCA
AAGGATTGGAGTTGCAAAATGACGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T4M1W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.54