Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6H72_RS08230 Genome accession   NZ_CP066055
Coordinates   1635835..1636761 (+) Length   308 a.a.
NCBI ID   WP_198457824.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1630835..1641761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS08220 (I6H72_08220) amiA3 1631996..1633975 (+) 1980 WP_198457823.1 peptide ABC transporter substrate-binding protein Regulator
  I6H72_RS08225 (I6H72_08225) amiC 1634339..1635835 (+) 1497 WP_006268182.1 ABC transporter permease Regulator
  I6H72_RS08230 (I6H72_08230) amiD 1635835..1636761 (+) 927 WP_198457824.1 oligopeptide ABC transporter permease OppC Regulator
  I6H72_RS08235 (I6H72_08235) amiE 1636770..1637837 (+) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  I6H72_RS08240 (I6H72_08240) amiF 1637848..1638771 (+) 924 WP_198457825.1 ATP-binding cassette domain-containing protein Regulator
  I6H72_RS08245 (I6H72_08245) - 1638914..1639738 (+) 825 Protein_1609 Cof-type HAD-IIB family hydrolase -
  I6H72_RS08250 (I6H72_08250) - 1639808..1640773 (-) 966 WP_058669830.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34509.53 Da        Isoelectric Point: 9.8589

>NTDB_id=516884 I6H72_RS08230 WP_198457824.1 1635835..1636761(+) (amiD) [Streptococcus constellatus strain FDAARGOS_1015]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTFGTPTVKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=516884 I6H72_RS08230 WP_198457824.1 1635835..1636761(+) (amiD) [Streptococcus constellatus strain FDAARGOS_1015]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCTCAATATTGGTTTGGTACAGATAGTAACGGGAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGCATCTGGGGAA
TTTCAAAAACTGTCGACCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATTGTTATTGTC
TTGACGTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
TATTCGTATCCAAATTCTACGTTATCGTGATTTAGAGTATAACCTTGCCAGTCGCACTTTTGGAACACCGACTGTTAAAA
TCATTGTAAAAAATATTATGCCACAGTTGGTTTCTGTGATTGTGACAACTGCTTCACAATTACTTCCAAGTTTCATTTCG
TACGAAGCCTTTCTGTCTTTCTTTGGTTTGGGACTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCGGATTATTC
ACAAAATGTTACAACAAATGCATATCTTTTCTGGATTCCATTAACAACGTTGATTTTGGTTTCCCTTTCCCTATTCGTTG
TCGGTCAGAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

83.117

100

0.831
  amiD Streptococcus thermophilus LMD-9

83.117

100

0.831