Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6H72_RS08240 Genome accession   NZ_CP066055
Coordinates   1637848..1638771 (+) Length   307 a.a.
NCBI ID   WP_198457825.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632848..1643771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS08225 (I6H72_08225) amiC 1634339..1635835 (+) 1497 WP_006268182.1 ABC transporter permease Regulator
  I6H72_RS08230 (I6H72_08230) amiD 1635835..1636761 (+) 927 WP_198457824.1 oligopeptide ABC transporter permease OppC Regulator
  I6H72_RS08235 (I6H72_08235) amiE 1636770..1637837 (+) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  I6H72_RS08240 (I6H72_08240) amiF 1637848..1638771 (+) 924 WP_198457825.1 ATP-binding cassette domain-containing protein Regulator
  I6H72_RS08245 (I6H72_08245) - 1638914..1639738 (+) 825 Protein_1609 Cof-type HAD-IIB family hydrolase -
  I6H72_RS08250 (I6H72_08250) - 1639808..1640773 (-) 966 WP_058669830.1 LacI family DNA-binding transcriptional regulator -
  I6H72_RS08255 (I6H72_08255) - 1640754..1642208 (-) 1455 WP_198457826.1 sucrose-6-phosphate hydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34855.99 Da        Isoelectric Point: 6.3204

>NTDB_id=516886 I6H72_RS08240 WP_198457825.1 1637848..1638771(+) (amiF) [Streptococcus constellatus strain FDAARGOS_1015]
MLEKLVEVKDVEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRTIIGLNDTSKGDIFFDGKRINGKKSKE
EESEVIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDANQHDYSTDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=516886 I6H72_RS08240 WP_198457825.1 1637848..1638771(+) (amiF) [Streptococcus constellatus strain FDAARGOS_1015]
ATGCTTGAAAAATTAGTAGAAGTTAAAGATGTGGAAATTTCCTTCGGTGAAGGAAGTAAGAAATTTGTTGCTGTAAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCCGGCTCTGGTAAGACAACAATCGGTCGTA
CCATTATTGGTTTGAACGATACTAGCAAGGGAGATATCTTCTTTGATGGAAAGAGAATCAATGGTAAGAAATCAAAAGAG
GAAGAATCAGAAGTGATTCGCAAGATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTATATTATTTCAGAGGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAGGTGAAAGATATTA
TTCATGAGGTAGGGTTGTTATCAGAGCATTTGACCCGCTACCCGCATGAATTTTCTGGTGGTCAGCGTCAACGGATTGGG
ATTGCCCGTGCGCTTGTTATGGAGCCAGATTTTGTGATTGCAGATGAGCCGATTTCAGCACTTGACGTTTCTGTGCGCGC
ACAAGTTTTGAATCTTCTTAAGAAATTCCAAAAAGATCTAGGTTTGACTTATCTCTTTATTGCTCACGATTTATCGGTTG
TACGCTTCATTTCAGATCGTATTGCGGTTATTTATAAGGGTGTGATTGTCGAAGTAGCTGAAACAGAAGAACTCTTTAAC
AATCCAATTCATCCTTATACTCAGTCTTTATTGTCAGCTGTGCCAATTCCAGATCCAATCTTGGAACGGAAGAAAGTGTT
GAAAGTCTATGATGCTAATCAGCATGATTATTCAACGGATAAGCCAGAAATGGTCGAAATTCGTCCTGGACACTTTGTGT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.928

99.674

0.866
  amiF Streptococcus salivarius strain HSISS4

86.928

99.674

0.866
  amiF Streptococcus thermophilus LMD-9

86.601

99.674

0.863