Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I23_RS04730 Genome accession   NZ_CP066047
Coordinates   993375..993905 (+) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica strain FDAARGOS_1066     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 988375..998905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I23_RS04705 (I6I23_04705) - 988614..989030 (+) 417 WP_000270392.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6I23_RS04710 (I6I23_04710) - 989033..989389 (+) 357 WP_000155666.1 MmcQ/YjbR family DNA-binding protein -
  I6I23_RS04715 (I6I23_04715) - 989390..989728 (-) 339 WP_000146599.1 membrane protein -
  I6I23_RS04720 (I6I23_04720) - 989715..990170 (-) 456 WP_000432197.1 hypothetical protein -
  I6I23_RS04725 (I6I23_04725) uvrA 990302..993127 (-) 2826 WP_000357725.1 excinuclease ABC subunit UvrA -
  I6I23_RS04730 (I6I23_04730) ssb 993375..993905 (+) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6I23_RS04735 (I6I23_04735) siiA 994946..995578 (+) 633 WP_000389238.1 SPI-4 type I secretion system auxiliary protein SiiA -
  I6I23_RS04740 (I6I23_04740) - 995575..996963 (+) 1389 WP_000875190.1 MotA/TolQ/ExbB proton channel family protein -
  I6I23_RS04745 (I6I23_04745) siiC 996953..998272 (+) 1320 WP_001541306.1 SPI-4 type I secretion system protein SiiC -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=516799 I6I23_RS04730 WP_000168322.1 993375..993905(+) (ssb) [Salmonella enterica strain FDAARGOS_1066]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=516799 I6I23_RS04730 WP_000168322.1 993375..993905(+) (ssb) [Salmonella enterica strain FDAARGOS_1066]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCGCCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCACAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477