Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6H64_RS04150 | Genome accession | NZ_CP066046 |
| Coordinates | 845574..846050 (-) | Length | 158 a.a. |
| NCBI ID | WP_008840867.1 | Uniprot ID | A0AAW8YED4 |
| Organism | Pediococcus acidilactici strain FDAARGOS_1007 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 836381..873406 | 845574..846050 | within | 0 |
Gene organization within MGE regions
Location: 836381..873406
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6H64_RS04085 (I6H64_04085) | - | 836381..836602 (-) | 222 | WP_002831526.1 | YneF family protein | - |
| I6H64_RS04090 (I6H64_04090) | - | 836672..836920 (-) | 249 | WP_008840877.1 | DUF896 domain-containing protein | - |
| I6H64_RS04095 (I6H64_04095) | lexA | 837027..837656 (+) | 630 | WP_002831524.1 | transcriptional repressor LexA | - |
| I6H64_RS04100 (I6H64_04100) | - | 837737..838345 (+) | 609 | WP_008840876.1 | hypothetical protein | - |
| I6H64_RS04105 (I6H64_04105) | - | 838447..839616 (-) | 1170 | WP_036685030.1 | hydroxymethylglutaryl-CoA synthase | - |
| I6H64_RS04110 (I6H64_04110) | - | 839950..841248 (-) | 1299 | WP_008840874.1 | PBSX family phage terminase large subunit | - |
| I6H64_RS10105 | - | 841245..841556 (-) | 312 | WP_008840873.1 | hypothetical protein | - |
| I6H64_RS10110 | - | 841570..841917 (-) | 348 | WP_052017554.1 | helix-turn-helix domain-containing protein | - |
| I6H64_RS04120 (I6H64_04120) | - | 841970..842743 (-) | 774 | WP_144235475.1 | DUF805 domain-containing protein | - |
| I6H64_RS04125 (I6H64_04125) | - | 842930..843715 (-) | 786 | WP_232623516.1 | abortive infection family protein | - |
| I6H64_RS04135 (I6H64_04135) | - | 844678..844914 (-) | 237 | WP_008840869.1 | hypothetical protein | - |
| I6H64_RS04140 (I6H64_04140) | - | 844907..845143 (-) | 237 | WP_036685021.1 | hypothetical protein | - |
| I6H64_RS04145 (I6H64_04145) | - | 845257..845562 (-) | 306 | WP_036685019.1 | helix-turn-helix domain-containing protein | - |
| I6H64_RS04150 (I6H64_04150) | ssb | 845574..846050 (-) | 477 | WP_008840867.1 | single-stranded DNA-binding protein | Machinery gene |
| I6H64_RS04155 (I6H64_04155) | - | 846043..846252 (-) | 210 | WP_008840866.1 | hypothetical protein | - |
| I6H64_RS04160 (I6H64_04160) | - | 846294..846467 (-) | 174 | WP_219938577.1 | helix-turn-helix domain-containing protein | - |
| I6H64_RS04165 (I6H64_04165) | - | 846545..846952 (-) | 408 | WP_036685016.1 | hypothetical protein | - |
| I6H64_RS04170 (I6H64_04170) | - | 846936..847619 (-) | 684 | WP_008840863.1 | putative HNHc nuclease | - |
| I6H64_RS04175 (I6H64_04175) | - | 847646..848110 (-) | 465 | WP_008840862.1 | hypothetical protein | - |
| I6H64_RS04180 (I6H64_04180) | - | 848122..849003 (-) | 882 | WP_052017552.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| I6H64_RS04185 (I6H64_04185) | bet | 848912..849709 (-) | 798 | WP_008840860.1 | phage recombination protein Bet | - |
| I6H64_RS04190 (I6H64_04190) | - | 849702..849947 (-) | 246 | WP_008840859.1 | hypothetical protein | - |
| I6H64_RS04195 (I6H64_04195) | - | 850040..850183 (-) | 144 | WP_158002712.1 | hypothetical protein | - |
| I6H64_RS04200 (I6H64_04200) | - | 850185..850466 (-) | 282 | WP_008840858.1 | hypothetical protein | - |
| I6H64_RS04205 (I6H64_04205) | - | 850467..850931 (-) | 465 | WP_232623517.1 | helix-turn-helix domain-containing protein | - |
| I6H64_RS04210 (I6H64_04210) | - | 851016..851231 (-) | 216 | WP_036685013.1 | hypothetical protein | - |
| I6H64_RS04215 (I6H64_04215) | - | 851300..851497 (+) | 198 | WP_036685010.1 | hypothetical protein | - |
| I6H64_RS04220 (I6H64_04220) | - | 851489..851857 (-) | 369 | WP_036685008.1 | hypothetical protein | - |
| I6H64_RS04225 (I6H64_04225) | - | 851889..852026 (-) | 138 | WP_008840855.1 | hypothetical protein | - |
| I6H64_RS04230 (I6H64_04230) | - | 852023..852253 (-) | 231 | WP_008840854.1 | helix-turn-helix transcriptional regulator | - |
| I6H64_RS04235 (I6H64_04235) | - | 852396..852758 (+) | 363 | WP_008840853.1 | helix-turn-helix domain-containing protein | - |
| I6H64_RS04240 (I6H64_04240) | - | 852770..853177 (+) | 408 | WP_036685006.1 | ImmA/IrrE family metallo-endopeptidase | - |
| I6H64_RS04245 (I6H64_04245) | - | 853246..854010 (+) | 765 | WP_008840851.1 | DUF4352 domain-containing protein | - |
| I6H64_RS04250 (I6H64_04250) | - | 854322..854984 (+) | 663 | WP_056984994.1 | ATP-binding protein | - |
| I6H64_RS04255 (I6H64_04255) | - | 855014..855349 (+) | 336 | WP_008842112.1 | STAS-like domain-containing protein | - |
| I6H64_RS04260 (I6H64_04260) | - | 855342..855869 (+) | 528 | WP_008842113.1 | PIN domain-containing protein | - |
| I6H64_RS04265 (I6H64_04265) | - | 855951..856220 (+) | 270 | WP_008842114.1 | hypothetical protein | - |
| I6H64_RS04270 (I6H64_04270) | - | 856308..857483 (+) | 1176 | WP_008842115.1 | tyrosine-type recombinase/integrase | - |
| I6H64_RS04275 (I6H64_04275) | fabI | 857611..858369 (-) | 759 | WP_008842116.1 | enoyl-ACP reductase FabI | - |
| I6H64_RS04280 (I6H64_04280) | accA | 858386..859153 (-) | 768 | WP_002831518.1 | carboxyltransferase subunit alpha | - |
| I6H64_RS04285 (I6H64_04285) | - | 859170..859994 (-) | 825 | WP_008842117.1 | acetyl-CoA carboxylase carboxyltransferase subunit beta | - |
| I6H64_RS04290 (I6H64_04290) | accC | 859984..861351 (-) | 1368 | WP_008842118.1 | acetyl-CoA carboxylase biotin carboxylase subunit | - |
| I6H64_RS04295 (I6H64_04295) | - | 861368..861778 (-) | 411 | WP_036685722.1 | 3-hydroxyacyl-ACP dehydratase FabZ family protein | - |
| I6H64_RS04300 (I6H64_04300) | - | 861791..862213 (-) | 423 | WP_008842120.1 | acetyl-CoA carboxylase biotin carboxyl carrier protein | - |
| I6H64_RS04305 (I6H64_04305) | fabF | 862218..863444 (-) | 1227 | WP_036685725.1 | beta-ketoacyl-ACP synthase II | - |
| I6H64_RS04310 (I6H64_04310) | fabG | 863460..864188 (-) | 729 | WP_008842122.1 | 3-oxoacyl-ACP reductase FabG | - |
| I6H64_RS04315 (I6H64_04315) | - | 864273..865217 (-) | 945 | WP_008842123.1 | ACP S-malonyltransferase | - |
| I6H64_RS04320 (I6H64_04320) | acpP | 865244..865480 (-) | 237 | WP_002831510.1 | acyl carrier protein | - |
| I6H64_RS04325 (I6H64_04325) | - | 865507..866466 (-) | 960 | WP_008842124.1 | beta-ketoacyl-ACP synthase III | - |
| I6H64_RS04330 (I6H64_04330) | fabZ | 866479..866928 (-) | 450 | WP_002831508.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| I6H64_RS04335 (I6H64_04335) | - | 867325..867657 (+) | 333 | WP_008842125.1 | DsrE family protein | - |
| I6H64_RS04340 (I6H64_04340) | - | 867679..868005 (+) | 327 | WP_008842126.1 | heavy metal-binding domain-containing protein | - |
| I6H64_RS04345 (I6H64_04345) | - | 868303..868893 (-) | 591 | WP_036685728.1 | hypothetical protein | - |
| I6H64_RS04350 (I6H64_04350) | - | 868921..869955 (-) | 1035 | WP_008842128.1 | hypothetical protein | - |
| I6H64_RS04355 (I6H64_04355) | - | 870169..871380 (+) | 1212 | WP_148276886.1 | ISL3 family transposase | - |
| I6H64_RS04360 (I6H64_04360) | rplS | 871515..871886 (-) | 372 | WP_002831503.1 | 50S ribosomal protein L19 | - |
| I6H64_RS04365 (I6H64_04365) | - | 872002..872757 (-) | 756 | WP_004165726.1 | ABC transporter permease | - |
| I6H64_RS04370 (I6H64_04370) | - | 872741..873406 (-) | 666 | WP_005916672.1 | ATP-binding cassette domain-containing protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17648.30 Da Isoelectric Point: 4.5762
>NTDB_id=516780 I6H64_RS04150 WP_008840867.1 845574..846050(-) (ssb) [Pediococcus acidilactici strain FDAARGOS_1007]
MINRAVLIGRLTRDPELKYTTNGVAVASFNLAVNRQFTNQDGEREADFINCVMWRKAAEIFCDYTHKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSFLESKSQSNQNNGSYVPQDNGFGQNNGPTTPNNTNPNDPFSGKQGQSIDITDEDLPF
MINRAVLIGRLTRDPELKYTTNGVAVASFNLAVNRQFTNQDGEREADFINCVMWRKAAEIFCDYTHKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSFLESKSQSNQNNGSYVPQDNGFGQNNGPTTPNNTNPNDPFSGKQGQSIDITDEDLPF
Nucleotide
Download Length: 477 bp
>NTDB_id=516780 I6H64_RS04150 WP_008840867.1 845574..846050(-) (ssb) [Pediococcus acidilactici strain FDAARGOS_1007]
ATGATTAACCGAGCGGTATTAATCGGGCGCTTAACAAGGGACCCAGAACTAAAGTACACAACCAATGGCGTAGCGGTCGC
TAGCTTTAACCTAGCAGTCAATCGCCAATTCACAAACCAAGATGGCGAACGTGAAGCAGATTTTATCAATTGCGTAATGT
GGCGGAAAGCGGCAGAAATTTTCTGCGACTATACTCACAAAGGTTCGTTGGTTGGCATTGATGGACGAATCCAAACTCGT
TCATACGAAAATCAACAAGGACAACGTGTTTATGTCACTGAAGTGGTCGCGGATAACTTTTCCTTTTTGGAATCTAAAAG
TCAGAGCAATCAAAACAATGGCAGTTATGTGCCACAAGACAACGGGTTTGGTCAAAATAATGGGCCAACTACGCCGAATA
ACACGAACCCAAATGATCCGTTTAGCGGAAAGCAAGGGCAATCCATTGATATCACCGATGAAGATTTACCGTTCTAG
ATGATTAACCGAGCGGTATTAATCGGGCGCTTAACAAGGGACCCAGAACTAAAGTACACAACCAATGGCGTAGCGGTCGC
TAGCTTTAACCTAGCAGTCAATCGCCAATTCACAAACCAAGATGGCGAACGTGAAGCAGATTTTATCAATTGCGTAATGT
GGCGGAAAGCGGCAGAAATTTTCTGCGACTATACTCACAAAGGTTCGTTGGTTGGCATTGATGGACGAATCCAAACTCGT
TCATACGAAAATCAACAAGGACAACGTGTTTATGTCACTGAAGTGGTCGCGGATAACTTTTCCTTTTTGGAATCTAAAAG
TCAGAGCAATCAAAACAATGGCAGTTATGTGCCACAAGACAACGGGTTTGGTCAAAATAATGGGCCAACTACGCCGAATA
ACACGAACCCAAATGATCCGTTTAGCGGAAAGCAAGGGCAATCCATTGATATCACCGATGAAGATTTACCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.895 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.491 |
100 |
0.608 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.089 |
0.399 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
51.282 |
74.051 |
0.38 |