Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I22_RS05890 Genome accession   NZ_CP066045
Coordinates   1251790..1252284 (+) Length   164 a.a.
NCBI ID   WP_023445625.1    Uniprot ID   V4S0L7
Organism   Stutzerimonas stutzeri strain FDAARGOS_1065     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1246790..1257284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I22_RS05880 (I6I22_05875) uvrA 1247291..1250134 (-) 2844 WP_042923776.1 excinuclease ABC subunit UvrA -
  I6I22_RS05885 (I6I22_05880) - 1250266..1251633 (+) 1368 WP_101274549.1 MFS transporter -
  I6I22_RS05890 (I6I22_05885) ssb 1251790..1252284 (+) 495 WP_023445625.1 single-stranded DNA-binding protein Machinery gene
  I6I22_RS05895 (I6I22_05890) - 1252295..1253179 (+) 885 WP_041014993.1 sugar nucleotide-binding protein -
  I6I22_RS05900 (I6I22_05895) - 1253172..1254101 (+) 930 WP_101274548.1 NAD-dependent epimerase/dehydratase family protein -
  I6I22_RS05905 (I6I22_05900) - 1254176..1254859 (-) 684 WP_101274547.1 OmpW/AlkL family protein -
  I6I22_RS05910 (I6I22_05905) - 1255044..1255829 (+) 786 WP_045666209.1 DUF3450 domain-containing protein -
  I6I22_RS05915 (I6I22_05910) - 1255826..1257172 (+) 1347 WP_101274546.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18385.46 Da        Isoelectric Point: 5.9492

>NTDB_id=516749 I6I22_RS05890 WP_023445625.1 1251790..1252284(+) (ssb) [Stutzerimonas stutzeri strain FDAARGOS_1065]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQARPQQREPQQAPRPQAQPQQPAARQQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=516749 I6I22_RS05890 WP_023445625.1 1251790..1252284(+) (ssb) [Stutzerimonas stutzeri strain FDAARGOS_1065]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGATAGCTGGAAGGACAAGCAGACCGGCCAGCTTCAGGAGCGTACCGAGT
GGCATCGCGTGGTGTTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAATGCTACATCGAG
GGACGCCTGCAGACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAAATAGTCGTCGACATGAACGGCAC
CATGCAGCTGCTCGGTGGCCGTGGCGGCAGTTCCGACGATGCGCCGCGTCAGGCTCGCCCGCAGCAGCGTGAGCCGCAGC
AGGCGCCGCGTCCGCAGGCCCAGCCGCAGCAGCCCGCTGCGCGGCAGCAGCCGGCACCGGACTACGACAGCTTCGACGAC
GACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V4S0L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.386

100

0.616
  ssb Glaesserella parasuis strain SC1401

45.652

100

0.512
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.506
  ssb Neisseria meningitidis MC58

46.591

100

0.5