Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6I32_RS03785 Genome accession   NZ_CP066041
Coordinates   792845..794812 (-) Length   655 a.a.
NCBI ID   WP_000837394.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 787845..799812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS03770 (I6I32_03770) cps4B 788367..789098 (-) 732 WP_049520843.1 capsular polysaccharide biosynthesis protein Cps4B -
  I6I32_RS03775 (I6I32_03775) - 789100..790545 (-) 1446 WP_000091222.1 LCP family protein -
  I6I32_RS03780 (I6I32_03780) amiA3 790737..792698 (-) 1962 WP_198464961.1 peptide ABC transporter substrate-binding protein Regulator
  I6I32_RS03785 (I6I32_03785) amiA 792845..794812 (-) 1968 WP_000837394.1 peptide ABC transporter substrate-binding protein Regulator
  I6I32_RS03790 (I6I32_03790) - 795099..795611 (-) 513 WP_000624246.1 GNAT family N-acetyltransferase -
  I6I32_RS03795 (I6I32_03795) - 795753..795911 (+) 159 Protein_752 site-specific integrase -
  I6I32_RS03800 (I6I32_03800) - 796212..797159 (-) 948 WP_057489227.1 AEC family transporter -
  I6I32_RS03805 (I6I32_03805) - 797236..798861 (-) 1626 WP_057489228.1 malolactic enzyme -
  I6I32_RS03810 (I6I32_03810) - 799220..799570 (+) 351 WP_025168989.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72480.97 Da        Isoelectric Point: 5.0129

>NTDB_id=516636 I6I32_RS03785 WP_000837394.1 792845..794812(-) (amiA) [Streptococcus oralis strain FDAARGOS_1075]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKVAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKI
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGINRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=516636 I6I32_RS03785 WP_000837394.1 792845..794812(-) (amiA) [Streptococcus oralis strain FDAARGOS_1075]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCGGATGCTCCCAAAACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGATTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAAGCCAAAGACTTTGTTACTGGGCTTAAACATGCTGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTTAGTGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTCCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACTCCATCAGGTATCCTAT
ATAATGGTCCTTACTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACCTTCTACGATGGATCAGACCAAGAATCCTTGATTCGTAGCTTTACACA
AGGTGCCTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TTTACAGTCCGCAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTACAATAAAACAGCCAAAACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCTCTTGACCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCACATGACTACG
TTCAAGTGGGTGAAAAAACCTTTGGAGAGTTGGCTCAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGTAGCCTTTGCTAAAGCAAAGGAAGAATTGCAAGC
CAAGGGTGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCGGTTCAACAAACCAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTTGATGTCCTTCAAATGACCGATAATGAGAAAATA
AGCATCACGTCTCAAGCCAAGGTTCCATCCCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATTCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGGATCAATCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACTAGCGACCTTAAT
AAGCGTTATGAAAAATACGCTAAAGCTCAAGCTTGGGTATCGGATAGTTCACTTTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTCACAAAAGCTTACTCTCAAGTCGGGATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGATGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.54