Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H84_RS00525 Genome accession   NZ_CP066037
Coordinates   111873..112436 (+) Length   187 a.a.
NCBI ID   WP_011657951.1    Uniprot ID   Q0BBT0
Organism   Burkholderia ambifaria strain FDAARGOS_1027     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 112968..113291 111873..112436 flank 532


Gene organization within MGE regions


Location: 111873..113291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H84_RS00525 (I6H84_00525) ssb 111873..112436 (+) 564 WP_011657951.1 single-stranded DNA-binding protein Machinery gene
  I6H84_RS00530 (I6H84_00530) - 113028..113291 (-) 264 Protein_104 transposase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19013.82 Da        Isoelectric Point: 5.3400

>NTDB_id=516602 I6H84_RS00525 WP_011657951.1 111873..112436(+) (ssb) [Burkholderia ambifaria strain FDAARGOS_1027]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGAGGGGGGSDEGGYGGGYGGGGGGGRGGEQMERGGGGGGGRAGGAPRG
GAAGGGQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=516602 I6H84_RS00525 WP_011657951.1 111873..112436(+) (ssb) [Burkholderia ambifaria strain FDAARGOS_1027]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTGGCGTTCTTCGGCCGTCTCGCCGAAATCGTCAGCGAATACCTGAAGAAGGGCTCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAGGGCCAGGACGGCCAGGATCGCTACTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTCGGCGGTCGCGGCGGCGCGGGCGGCGGCGGTGGCGGCAGTGACGAAGGCGGTTACGGCGGCGGCTACGGTGGTGGTG
GTGGCGGCGGTCGCGGCGGCGAGCAGATGGAGCGCGGCGGTGGCGGCGGGGGTGGTCGTGCCGGCGGCGCACCGCGCGGC
GGCGCAGCAGGCGGCGGCCAGAGCCGTCCGAGCGCGCCGGCAGGCGGCGGCTTCGACGAGATGGACGACGATATTCCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0BBT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.739

100

0.508
  ssb Glaesserella parasuis strain SC1401

46.032

100

0.465
  ssb Neisseria gonorrhoeae MS11

43.784

98.93

0.433
  ssb Neisseria meningitidis MC58

43.243

98.93

0.428