Detailed information NTG0051660

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: THIVI_RS17340
• Genome accession: NC_018012
• Coordinates: 3911944..3913293 (-)
• Length: 449 a.a.
• NCBI ID: WP_014779837.1
• Uniprot ID: I3YEM2
• Organism: Thiocystis violascens DSM 198
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3906944..3918293

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
THIVI_RS17335 (Thivi_3577)	argA	3910505..3911848 (-)	1344	WP_014779836.1	amino-acid N-acetyltransferase	-
THIVI_RS17340 (Thivi_3578)	pilR	3911944..3913293 (-)	1350	WP_014779837.1	sigma-54 dependent transcriptional regulator	Regulator
THIVI_RS17345 (Thivi_3579)	ahcY	3913784..3915190 (+)	1407	WP_014779838.1	adenosylhomocysteinase	-
THIVI_RS17350 (Thivi_3580)	-	3915261..3915758 (+)	498	WP_014779839.1	Uma2 family endonuclease	-
THIVI_RS23955 (Thivi_3581)	-	3915807..3915977 (+)	171	WP_083845776.1	type II toxin-antitoxin system HicA family toxin	-
THIVI_RS17355 (Thivi_3582)	-	3915974..3916240 (+)	267	WP_014779840.1	pilus biosynthesis protein HicB	-
THIVI_RS17360 (Thivi_3583)	metF	3916290..3917153 (+)	864	WP_014779841.1	methylenetetrahydrofolate reductase [NAD(P)H]	-
THIVI_RS17365	-	3917402..3917902 (+)	501	WP_041447071.1	DNA methyltransferase	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49529.78 Da
• Isoelectric Point: 5.5766

>NTDB_id=51660 THIVI_RS17340 WP_014779837.1 3911944..3913293(-) (pilR) [Thiocystis violascens DSM 198]
MNKAQALVVDDEADLLELLKITLARMDVQAVTALTLAEARRHLERGQFDLCLTDMNLPDGSGIDLIRQIGEQYPQIPVAM
ITAHGSMESAVAAMKAGAFDFVSKPVDLQLLRRLVGSALKLRGHVSASDDERGDTGPQLLGESAAMERIRQLIVKLARNQ
APVFITGESGTGKELAARLIHAQGPHREGRFVAVNCGAIPQDLVESELFGHKKGSFTGAISDKEGLFQTAEGGTLFLDEV
ADLPLATQVKLLRAIQEKSVRPVGAQREVAVDARIISASHRDLTEEVERGRFRQDLFYRINVIELRMPALRERPRDIPLL
ADRLLQRLASRQGDRPALTLSAEAIEALTRYAFPGNVRELENILERALALCEGERIDVADLYLPRTEAPAVSTDAVDETV
PLEESLREIEKREILNALDATHWDQAAASKRLKMTPKSLRYRLARLGIE

Nucleotide

• Length: 1350 bp

>NTDB_id=51660 THIVI_RS17340 WP_014779837.1 3911944..3913293(-) (pilR) [Thiocystis violascens DSM 198]
ATGAACAAGGCCCAGGCGCTCGTCGTCGATGACGAAGCCGATCTCCTCGAACTGCTGAAGATCACGCTCGCGCGGATGGA
CGTGCAGGCCGTGACCGCGCTGACGCTCGCCGAGGCCCGGCGGCACCTGGAGCGCGGCCAGTTCGATCTCTGTCTGACCG
ACATGAATCTGCCCGATGGCAGCGGGATCGATCTGATCCGTCAGATCGGCGAGCAGTATCCGCAGATTCCCGTGGCGATG
ATCACCGCGCACGGCAGCATGGAATCGGCGGTCGCGGCGATGAAGGCGGGCGCCTTCGATTTCGTGTCCAAGCCGGTCGA
CCTCCAACTGTTGCGCCGGCTCGTCGGTTCGGCCCTTAAGCTGCGCGGGCATGTCTCGGCCAGCGACGACGAGCGCGGCG
ACACGGGACCGCAACTCCTGGGCGAGTCGGCCGCGATGGAGCGGATCCGGCAACTGATCGTCAAGCTGGCCCGCAATCAG
GCGCCGGTCTTCATCACCGGTGAGAGCGGGACGGGCAAGGAACTGGCGGCCCGGCTGATTCATGCGCAGGGACCGCATCG
CGAAGGCCGGTTCGTGGCCGTGAACTGCGGCGCCATCCCCCAGGATCTGGTGGAGAGCGAGTTGTTCGGGCACAAAAAGG
GCAGTTTCACCGGGGCGATCAGCGATAAGGAAGGGCTGTTCCAGACCGCCGAGGGCGGGACGCTCTTCCTCGACGAGGTC
GCGGATCTGCCCCTGGCGACGCAGGTCAAGCTGTTGCGCGCAATCCAGGAGAAGAGCGTGCGTCCCGTTGGCGCTCAACG
CGAGGTTGCGGTGGACGCGCGTATCATCAGCGCCAGTCATCGCGATCTGACGGAGGAGGTTGAGCGGGGGCGCTTCCGCC
AAGACCTCTTTTATCGCATCAACGTCATCGAGCTACGGATGCCGGCACTGCGCGAACGGCCACGGGATATACCGCTGCTC
GCGGACCGCTTGCTCCAGCGACTCGCCAGCCGGCAGGGCGACCGGCCCGCCCTGACATTGTCGGCCGAGGCGATCGAGGC
GCTGACGCGGTACGCCTTCCCCGGCAACGTTCGCGAACTGGAAAATATCCTGGAACGCGCCCTGGCGCTGTGCGAGGGCG
AGCGGATCGATGTCGCGGATCTCTACCTACCCCGGACGGAAGCGCCCGCAGTCTCGACGGACGCCGTGGACGAGACGGTT
CCCCTGGAAGAATCTTTACGCGAGATCGAGAAGCGGGAAATCCTCAATGCGCTCGACGCGACCCACTGGGACCAGGCCGC
GGCGAGCAAGAGGCTGAAGATGACGCCGAAATCGCTGCGCTACCGTCTGGCGAGGCTCGGGATCGAATGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

• Response regulator receiver domain (Response_reg) (7-113)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

3D structure

• AlphaFold DB: I3YEM2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.513	100	0.599
pilR	Acinetobacter baumannii strain A118	48.478	100	0.497
luxO	Vibrio cholerae strain A1552	37.444	99.332	0.372