Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   I6H85_RS03250 Genome accession   NZ_CP066027
Coordinates   630652..631596 (-) Length   314 a.a.
NCBI ID   WP_002777230.1    Uniprot ID   A0A3Z8C350
Organism   Campylobacter coli strain FDAARGOS_1028     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 625652..636596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H85_RS03215 (I6H85_03215) - 625844..626044 (+) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -
  I6H85_RS03220 (I6H85_03220) - 626074..626373 (-) 300 WP_002777238.1 c-type cytochrome -
  I6H85_RS03225 (I6H85_03225) - 626450..627013 (+) 564 WP_002777235.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  I6H85_RS03230 (I6H85_03230) rfaD 627010..627963 (+) 954 WP_002777234.1 ADP-glyceromanno-heptose 6-epimerase -
  I6H85_RS03235 (I6H85_03235) rfaE1 627956..629341 (+) 1386 WP_048813179.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  I6H85_RS03240 (I6H85_03240) gmhA 629338..629898 (+) 561 WP_002777232.1 D-sedoheptulose 7-phosphate isomerase -
  I6H85_RS03245 (I6H85_03245) - 629898..630659 (+) 762 WP_002777231.1 glycosyltransferase family 25 protein -
  I6H85_RS03250 (I6H85_03250) waaF 630652..631596 (-) 945 WP_002777230.1 lipopolysaccharide heptosyltransferase II Regulator
  I6H85_RS03255 (I6H85_03255) - 631655..632476 (+) 822 WP_002777229.1 glycosyltransferase family 2 protein -
  I6H85_RS10055 (I6H85_03260) - 632816..632962 (-) 147 WP_168848228.1 hypothetical protein -
  I6H85_RS03265 (I6H85_03265) - 632959..633156 (-) 198 WP_002777227.1 hypothetical protein -
  I6H85_RS10060 (I6H85_03270) - 633192..633517 (-) 326 Protein_637 alpha-2,3-sialyltransferase -
  I6H85_RS03280 (I6H85_03280) - 633645..634445 (+) 801 WP_002777224.1 class I SAM-dependent methyltransferase -
  I6H85_RS03285 (I6H85_03285) - 634526..635461 (+) 936 WP_002777223.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 36065.60 Da        Isoelectric Point: 10.2686

>NTDB_id=516570 I6H85_RS03250 WP_002777230.1 630652..631596(-) (waaF) [Campylobacter coli strain FDAARGOS_1028]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=516570 I6H85_RS03250 WP_002777230.1 630652..631596(-) (waaF) [Campylobacter coli strain FDAARGOS_1028]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCTAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(106-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z8C350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

83.067

99.682

0.828