Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H83_RS07375 Genome accession   NZ_CP066026
Coordinates   1480760..1481260 (+) Length   166 a.a.
NCBI ID   WP_003165522.1    Uniprot ID   A0A4P1JZP1
Organism   Brevundimonas diminuta strain FDAARGOS_1026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1475760..1486260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H83_RS07360 (I6H83_07360) - 1476780..1479497 (+) 2718 WP_128720312.1 transcriptional regulator -
  I6H83_RS07365 (I6H83_07365) - 1479577..1480245 (+) 669 WP_046654628.1 hypothetical protein -
  I6H83_RS07370 (I6H83_07370) - 1480242..1480670 (+) 429 WP_003165523.1 hypothetical protein -
  I6H83_RS07375 (I6H83_07375) ssb 1480760..1481260 (+) 501 WP_003165522.1 single-stranded DNA-binding protein Machinery gene
  I6H83_RS07380 (I6H83_07380) - 1481325..1481891 (-) 567 WP_128720311.1 nucleoside 2-deoxyribosyltransferase domain-containing protein -
  I6H83_RS07385 (I6H83_07385) - 1481953..1482909 (+) 957 WP_046654625.1 DMT family transporter -
  I6H83_RS07390 (I6H83_07390) - 1482915..1483400 (-) 486 WP_223850982.1 superoxide dismutase family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18037.81 Da        Isoelectric Point: 5.9602

>NTDB_id=516550 I6H83_RS07375 WP_003165522.1 1480760..1481260(+) (ssb) [Brevundimonas diminuta strain FDAARGOS_1026]
MAGSVNKVILVGNLGRDPEIRSLNNGDRVANLRIATSETWRDKATGERKEKTEWHSVVIFNDNIVKVAENYLKKGSTVYV
EGSLQTRKWTDQQGVEKYSTEIVIQRFNGQLTMLGGRGDSQGGGGDRGGYGGGGRDDDYSSGFSTGGANKPSGPKESYDL
NDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=516550 I6H83_RS07375 WP_003165522.1 1480760..1481260(+) (ssb) [Brevundimonas diminuta strain FDAARGOS_1026]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAACCTGGGTCGCGACCCGGAAATCCGCTCGCTGAACAACGGCGA
TCGCGTCGCCAACCTGCGTATCGCCACCTCGGAAACCTGGCGCGACAAGGCCACGGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTCGTCATCTTCAACGACAACATCGTCAAGGTGGCCGAGAACTATCTGAAGAAGGGCTCGACCGTTTACGTC
GAAGGCTCGCTGCAGACCCGCAAATGGACCGATCAGCAGGGCGTCGAGAAATACTCGACCGAGATCGTCATTCAGCGTTT
CAACGGCCAGCTGACCATGCTGGGCGGCCGCGGCGACAGCCAGGGCGGCGGCGGTGATCGCGGCGGCTACGGCGGCGGCG
GTCGCGACGACGACTATTCCTCGGGCTTCTCGACGGGCGGCGCCAACAAGCCCTCGGGTCCGAAGGAAAGCTACGACCTG
AACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P1JZP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.875

100

0.542
  ssb Vibrio cholerae strain A1552

50

100

0.524
  ssb Neisseria meningitidis MC58

39.665

100

0.428
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.428