Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6H77_RS02815 Genome accession   NZ_CP066021
Coordinates   591379..593346 (-) Length   655 a.a.
NCBI ID   WP_000837399.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 586379..598346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS02800 (I6H77_02800) cps4B 586901..587632 (-) 732 WP_000565325.1 capsular polysaccharide biosynthesis protein Cps4B -
  I6H77_RS02805 (I6H77_02805) - 587634..589079 (-) 1446 WP_000091221.1 LCP family protein -
  I6H77_RS02810 (I6H77_02810) amiA3 589271..591232 (-) 1962 WP_000571829.1 peptide ABC transporter substrate-binding protein Regulator
  I6H77_RS02815 (I6H77_02815) amiA 591379..593346 (-) 1968 WP_000837399.1 peptide ABC transporter substrate-binding protein Regulator
  I6H77_RS02820 (I6H77_02820) - 593632..594144 (-) 513 WP_000624246.1 GNAT family N-acetyltransferase -
  I6H77_RS02825 (I6H77_02825) - 594413..595378 (-) 966 WP_025169028.1 hypothetical protein -
  I6H77_RS02830 (I6H77_02830) rpsI 595609..596001 (-) 393 WP_000075973.1 30S ribosomal protein S9 -
  I6H77_RS02835 (I6H77_02835) rplM 596020..596466 (-) 447 WP_002875442.1 50S ribosomal protein L13 -
  I6H77_RS02840 (I6H77_02840) - 596677..597876 (-) 1200 WP_001245394.1 ABC transporter permease -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72523.01 Da        Isoelectric Point: 5.0129

>NTDB_id=516444 I6H77_RS02815 WP_000837399.1 591379..593346(-) (amiA) [Streptococcus oralis strain FDAARGOS_1020]
MKSKKWLLGAGAVLSAALLLTACGQSEKRADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYISGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKVAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKI
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGINRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=516444 I6H77_RS02815 WP_000837399.1 591379..593346(-) (amiA) [Streptococcus oralis strain FDAARGOS_1020]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAGAGCGGATGCTCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACTAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAAGCTAAAGACTTTGTTACTGGGCTTAAACATGCCGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATATTAGTGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTATACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACGGC
AACCATGCTTCCGGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACTCCATCGGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTTAAGATTGACAATATTAAACTAACTTTCTACGATGGATCAGACCAAGAATCTTTGATTCGTAGCTTTACACA
AGGAGCTTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCGACTAAACAAGAGTACGGCGATAAGATTG
TTTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTACAATAAAACAGCCAAAACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCTCTTGACCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCTCATGACTACG
TTCAAGTGGGTGAAAAAACCTTTGGAGAGTTGGCGCAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGTAGCCTTTGCTAAAGCAAAGGAAGAATTGCAAGC
CAAGGGTGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCGGTTCAACAAACCAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTTGATGTCCTTCAAATGACCGATAATGAGAAAATA
AGCATCACGTCTCAAGCCAAGGTTCCATCCCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTATCTCAACATTCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGGATCAATCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACTAGCGACCTTAAT
AAGCGTTATGAAAAATACGCTAAAGCTCAAGCTTGGGTATCGGATAGTTCACTTTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTCACAAAAGCTTACTCTCAAGTCGGGATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGATGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.54