Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H54_RS29900 Genome accession   NZ_CP066006
Coordinates   6569756..6570322 (-) Length   188 a.a.
NCBI ID   WP_012202749.1    Uniprot ID   A0A080NKP3
Organism   Delftia acidovorans strain FDAARGOS_997     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6564756..6575322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H54_RS29875 (I6H54_29875) - 6564774..6565466 (-) 693 WP_016449342.1 hypothetical protein -
  I6H54_RS31215 - 6565469..6565777 (-) 309 WP_230590698.1 hypothetical protein -
  I6H54_RS29885 (I6H54_29885) - 6566174..6567628 (-) 1455 WP_230590699.1 SulP family inorganic anion transporter -
  I6H54_RS29890 (I6H54_29890) - 6567978..6569231 (-) 1254 WP_062794130.1 type II toxin-antitoxin system HipA family toxin -
  I6H54_RS29895 (I6H54_29895) - 6569215..6569535 (-) 321 WP_034389720.1 helix-turn-helix transcriptional regulator -
  I6H54_RS29900 (I6H54_29900) ssb 6569756..6570322 (-) 567 WP_012202749.1 single-stranded DNA-binding protein Machinery gene
  I6H54_RS29905 (I6H54_29905) - 6570483..6571658 (-) 1176 WP_034389722.1 MFS transporter -
  I6H54_RS29910 (I6H54_29910) uvrA 6571932..6575045 (+) 3114 WP_034389724.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20389.52 Da        Isoelectric Point: 5.9554

>NTDB_id=516281 I6H54_RS29900 WP_012202749.1 6569756..6570322(-) (ssb) [Delftia acidovorans strain FDAARGOS_997]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=516281 I6H54_RS29900 WP_012202749.1 6569756..6570322(-) (ssb) [Delftia acidovorans strain FDAARGOS_997]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGACGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAATGGCCGCCTGGCTGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCAGCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGCGGTGGCCAGCAAGGCGGCGGTTACGGCGATGAAGGCTACGGCGACAGCGGCT
ACGACGCCCCTCCGCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCTCCCGCGCCCATGGCACCCCCGCCCCAGCGCGCAGCCTCGGGCTTTGACGATATGGATGACGACATTCC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A080NKP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.553
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.463
  ssb Neisseria meningitidis MC58

44.974

100

0.452