NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	I6I17_RS09175	Genome accession	NZ_CP065999
Coordinates	1808020..1808856 (-)	Length	278 a.a.
NCBI ID	WP_040564261.1	Uniprot ID	-
Organism	Kingella denitrificans strain FDAARGOS_1060
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1803020..1813856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I17_RS09150 (I6I17_09150)	rph	1804426..1805154 (-)	729	WP_040564714.1	ribonuclease PH	-
I6I17_RS09155 (I6I17_09155)	-	1805405..1806025 (-)	621	WP_003782385.1	L-threonylcarbamoyladenylate synthase	-
I6I17_RS09160 (I6I17_09160)	pncC	1806070..1806546 (-)	477	WP_040564260.1	nicotinamide-nucleotide amidase	-
I6I17_RS09165 (I6I17_09165)	zapD	1806568..1807317 (-)	750	WP_003782389.1	cell division protein ZapD	-
I6I17_RS09170 (I6I17_09170)	coaE	1807408..1808016 (-)	609	WP_003782391.1	dephospho-CoA kinase	-
I6I17_RS09175 (I6I17_09175)	pilD	1808020..1808856 (-)	837	WP_040564261.1	A24 family peptidase	Machinery gene
I6I17_RS09180 (I6I17_09180)	pilG	1808979..1810262 (-)	1284	WP_003782394.1	type II secretion system F family protein	Machinery gene
I6I17_RS09185 (I6I17_09185)	pilF	1810306..1811985 (-)	1680	WP_115324816.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6I17_RS09190 (I6I17_09190)	lysA	1812203..1813426 (-)	1224	WP_003782402.1	diaminopimelate decarboxylase	-
I6I17_RS09195 (I6I17_09195)	lptM	1813413..1813598 (-)	186	WP_003782403.1	LPS translocon maturation chaperone LptM	-

Sequence

Protein

Download Length: 278 a.a. Molecular weight: 30660.65 Da Isoelectric Point: 9.1641

                                >NTDB_id=516255 I6I17_RS09175 WP_040564261.1 1808020..1808856(-) (pilD) [Kingella denitrificans strain FDAARGOS_1060]

MDVPAIVLAFIFGLLIGSFLNVVIYRLPVMLHQESRQAAQEYLGLPVETLPTFNLVTPPSRCGHCGARVKPWQNIPIISW

LLLRGRCAGCHTKISIRYPLVELLTGILFALVAWRYGWTWYTVGACLFTAYVVAMTFIDADTQLLPDELTVPLIRWGLLF

NLLTGFVSLQQAVWGALVGYMSLWLMSKTYKLLRGVDGMGGGDFQMLSALGAWLGVSTIPIIVFSAAIVGIVAALIKRVA

KQQPMAFGPCLAVAGWVVFLFHDSVMRGMAWYLAKSGF

Nucleotide

Download Length: 837 bp

                                >NTDB_id=516255 I6I17_RS09175 WP_040564261.1 1808020..1808856(-) (pilD) [Kingella denitrificans strain FDAARGOS_1060]

ATGGACGTACCAGCCATTGTTTTGGCCTTTATTTTCGGGCTGCTCATCGGCAGTTTTCTCAATGTCGTGATTTACCGCCT

ACCGGTCATGCTGCATCAAGAGTCGCGTCAGGCGGCGCAGGAATACTTGGGGCTACCGGTGGAAACATTACCGACATTTA

ATCTTGTAACGCCGCCGTCGCGTTGCGGTCATTGCGGTGCGCGTGTAAAACCATGGCAGAATATCCCAATTATCAGTTGG

TTGCTGTTGCGCGGGCGATGTGCAGGCTGCCATACCAAAATCAGCATCCGCTATCCGTTGGTCGAACTGCTTACCGGTAT

TTTGTTTGCGCTGGTGGCTTGGCGGTACGGTTGGACGTGGTACACGGTCGGTGCTTGCCTGTTCACGGCATATGTGGTGG

CGATGACGTTTATCGATGCTGATACGCAGTTGCTGCCCGATGAATTGACTGTTCCGCTGATTCGTTGGGGTTTGCTGTTC

AATCTGTTGACCGGGTTCGTTTCGCTGCAACAAGCCGTTTGGGGCGCGTTGGTGGGTTATATGAGCCTGTGGTTGATGTC

CAAAACCTACAAACTGCTGCGCGGTGTGGACGGTATGGGCGGCGGCGATTTTCAAATGCTTTCCGCTTTGGGTGCATGGC

TGGGCGTTTCGACCATTCCGATTATCGTGTTCTCAGCGGCCATTGTGGGGATTGTTGCGGCCTTAATCAAACGCGTGGCC

AAACAGCAGCCGATGGCGTTCGGGCCTTGTTTGGCCGTGGCGGGCTGGGTGGTGTTCCTGTTCCACGATTCCGTGATGCG

GGGCATGGCCTGGTATTTGGCGAAATCGGGATTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(128-234)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-116)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Neisseria gonorrhoeae MS11	56.41	98.201	0.554
pilD	Vibrio cholerae strain A1552	45.29	99.281	0.45
pilD	Vibrio campbellii strain DS40M4	44.043	99.64	0.439
pilD	Acinetobacter nosocomialis M2	43.629	93.165	0.406
pilD	Acinetobacter baumannii D1279779	43.629	93.165	0.406

Detailed information NTG0516255