Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   I6I17_RS00675 Genome accession   NZ_CP065999
Coordinates   117524..117835 (-) Length   103 a.a.
NCBI ID   WP_003783360.1    Uniprot ID   F0F0G6
Organism   Kingella denitrificans strain FDAARGOS_1060     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112524..122835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I17_RS00650 (I6I17_00650) - 113066..113524 (+) 459 WP_003783348.1 HAD domain-containing protein -
  I6I17_RS00655 (I6I17_00655) - 113521..113766 (+) 246 WP_003783350.1 hypothetical protein -
  I6I17_RS00660 (I6I17_00660) uvrC 113771..115618 (+) 1848 WP_003783352.1 excinuclease ABC subunit UvrC -
  I6I17_RS00665 (I6I17_00665) tsf 115711..116571 (-) 861 WP_003783356.1 translation elongation factor Ts -
  I6I17_RS00670 (I6I17_00670) rpsB 116647..117369 (-) 723 WP_040564352.1 30S ribosomal protein S2 -
  I6I17_RS00675 (I6I17_00675) comE 117524..117835 (-) 312 WP_003783360.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10736.52 Da        Isoelectric Point: 10.5382

>NTDB_id=516235 I6I17_RS00675 WP_003783360.1 117524..117835(-) (comE) [Kingella denitrificans strain FDAARGOS_1060]
MLKKVLFTLFSIGCAALSFAAVNVNTATVDELDKQLTGIGPAKARAIVEYREKNGPFKSVDDLAKVPGIKEATINKFRAQ
ATVGNGAAAPKPAAPAKPQPATK

Nucleotide


Download         Length: 312 bp        

>NTDB_id=516235 I6I17_RS00675 WP_003783360.1 117524..117835(-) (comE) [Kingella denitrificans strain FDAARGOS_1060]
ATGTTGAAAAAAGTATTGTTTACTTTGTTTTCGATTGGTTGCGCAGCATTAAGTTTTGCGGCTGTGAATGTTAATACAGC
AACTGTGGATGAGTTGGATAAACAATTAACCGGCATTGGTCCTGCAAAGGCACGTGCGATTGTTGAGTATCGTGAGAAAA
ATGGCCCGTTCAAATCTGTGGATGATTTGGCTAAAGTACCGGGAATTAAAGAGGCCACGATTAACAAATTCCGTGCACAG
GCGACAGTGGGAAATGGTGCAGCAGCACCTAAACCGGCAGCGCCTGCAAAACCACAGCCTGCAACGAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0F0G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.34

100

0.553
  comE Neisseria gonorrhoeae MS11

55.34

100

0.553
  comE Neisseria gonorrhoeae MS11

55.34

100

0.553
  comE Neisseria gonorrhoeae MS11

55.34

100

0.553
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

79.612

0.398
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

83.495

0.369