Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I07_RS08120 Genome accession   NZ_CP065997
Coordinates   1814951..1815472 (+) Length   173 a.a.
NCBI ID   WP_035359744.1    Uniprot ID   -
Organism   Achromobacter deleyi strain FDAARGOS_1050     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1809951..1820472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I07_RS08110 (I6I07_08110) uvrA 1810487..1813342 (-) 2856 WP_420094569.1 excinuclease ABC subunit UvrA -
  I6I07_RS08115 (I6I07_08115) - 1813477..1814661 (+) 1185 WP_198486255.1 MFS transporter -
  I6I07_RS08120 (I6I07_08120) ssb 1814951..1815472 (+) 522 WP_035359744.1 single-stranded DNA-binding protein Machinery gene
  I6I07_RS08125 (I6I07_08125) - 1816201..1816506 (+) 306 WP_006392008.1 DUF4148 domain-containing protein -
  I6I07_RS08130 (I6I07_08130) - 1816587..1816892 (+) 306 WP_198486256.1 DUF4148 domain-containing protein -
  I6I07_RS08135 (I6I07_08135) - 1817023..1817613 (+) 591 WP_006392006.1 TetR/AcrR family transcriptional regulator -
  I6I07_RS08140 (I6I07_08140) - 1817702..1818556 (-) 855 WP_198486257.1 isochorismatase family protein -
  I6I07_RS08145 (I6I07_08145) - 1818862..1819479 (-) 618 WP_198486258.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18670.71 Da        Isoelectric Point: 5.9702

>NTDB_id=516185 I6I07_RS08120 WP_035359744.1 1814951..1815472(+) (ssb) [Achromobacter deleyi strain FDAARGOS_1050]
MASVNKVILVGNLGRDPEVRYSPEGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPARQPQQRAPAQRPAPQQRPAPQAAPAGG
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=516185 I6I07_RS08120 WP_035359744.1 1814951..1815472(+) (ssb) [Achromobacter deleyi strain FDAARGOS_1050]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTATAGCCCCGAGGGGGCCGC
AATCTGCAACATGTCCATCGCCACGACCTCCACCTGGAAGGACAAGGCATCGGGCGAACGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAGGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACGGGCGCTGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGTGGCGGCAGCTACGGTGGCGGCGGCGGTTACGACGACGCGCCGGCGC
GCCAGCCGCAGCAGCGCGCCCCGGCCCAGCGCCCGGCGCCGCAGCAGCGTCCCGCGCCCCAGGCTGCACCCGCCGGTGGC
GGCGCCAACCTGGCCGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.578
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Neisseria meningitidis MC58

52.571

100

0.532