Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I21_RS06650 Genome accession   NZ_CP065984
Coordinates   1322301..1322801 (+) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_1064     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1296582..1326737 1322301..1322801 within 0


Gene organization within MGE regions


Location: 1296582..1326737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I21_RS06465 (I6I21_06465) - 1296582..1296746 (+) 165 WP_003131988.1 hypothetical protein -
  I6I21_RS06470 (I6I21_06470) - 1296890..1297327 (+) 438 WP_003131986.1 low molecular weight protein-tyrosine-phosphatase -
  I6I21_RS06475 (I6I21_06475) - 1297428..1297793 (+) 366 WP_003131985.1 MerR family transcriptional regulator -
  I6I21_RS06480 (I6I21_06480) glnA 1297855..1299195 (+) 1341 WP_003131984.1 type I glutamate--ammonia ligase -
  I6I21_RS06485 (I6I21_06485) - 1299254..1299454 (-) 201 WP_003131983.1 hypothetical protein -
  I6I21_RS06490 (I6I21_06490) - 1300183..1300491 (-) 309 WP_043991183.1 sigma factor-like helix-turn-helix DNA-binding protein -
  I6I21_RS06495 (I6I21_06495) - 1300594..1300923 (-) 330 WP_043991182.1 hypothetical protein -
  I6I21_RS06500 (I6I21_06500) - 1301137..1301727 (-) 591 WP_014570849.1 HK97 family phage prohead protease -
  I6I21_RS06505 (I6I21_06505) - 1301736..1302344 (-) 609 WP_014570848.1 hypothetical protein -
  I6I21_RS06510 (I6I21_06510) - 1302370..1302552 (-) 183 WP_003131978.1 hypothetical protein -
  I6I21_RS06515 (I6I21_06515) - 1302762..1304396 (-) 1635 WP_014570847.1 DNA primase family protein -
  I6I21_RS06520 (I6I21_06520) - 1304407..1305201 (-) 795 WP_014570846.1 bifunctional DNA primase/polymerase -
  I6I21_RS06525 (I6I21_06525) - 1305205..1305534 (-) 330 WP_014570845.1 hypothetical protein -
  I6I21_RS06530 (I6I21_06530) - 1305531..1305842 (-) 312 WP_014570844.1 hypothetical protein -
  I6I21_RS12865 - 1305839..1306093 (-) 255 WP_058207065.1 hypothetical protein -
  I6I21_RS06535 (I6I21_06535) - 1306090..1306329 (-) 240 WP_014570843.1 hypothetical protein -
  I6I21_RS06540 (I6I21_06540) - 1306372..1306653 (-) 282 WP_014570842.1 hypothetical protein -
  I6I21_RS06545 (I6I21_06545) - 1306665..1307090 (-) 426 WP_014570841.1 hypothetical protein -
  I6I21_RS06550 (I6I21_06550) - 1307095..1307289 (-) 195 WP_011677056.1 DUF1655 domain-containing protein -
  I6I21_RS06555 (I6I21_06555) - 1307408..1307593 (-) 186 WP_014570840.1 helix-turn-helix domain-containing protein -
  I6I21_RS06560 (I6I21_06560) - 1307671..1308489 (+) 819 WP_043991180.1 TIGR02391 family protein -
  I6I21_RS06565 (I6I21_06565) - 1308674..1308919 (-) 246 WP_080554629.1 hypothetical protein -
  I6I21_RS06570 (I6I21_06570) - 1308923..1309120 (-) 198 WP_014570838.1 hypothetical protein -
  I6I21_RS06575 (I6I21_06575) - 1309378..1309761 (+) 384 WP_014570837.1 helix-turn-helix domain-containing protein -
  I6I21_RS06580 (I6I21_06580) - 1309773..1310324 (+) 552 WP_014570836.1 hypothetical protein -
  I6I21_RS06585 (I6I21_06585) - 1310338..1310532 (+) 195 WP_014570835.1 hypothetical protein -
  I6I21_RS06590 (I6I21_06590) - 1310770..1311078 (+) 309 WP_232626158.1 hypothetical protein -
  I6I21_RS06595 (I6I21_06595) - 1312674..1312823 (+) 150 WP_153915400.1 hypothetical protein -
  I6I21_RS06600 (I6I21_06600) - 1312946..1313140 (+) 195 WP_003131963.1 hypothetical protein -
  I6I21_RS06605 (I6I21_06605) - 1313678..1314862 (+) 1185 WP_003131962.1 tyrosine-type recombinase/integrase -
  I6I21_RS06610 (I6I21_06610) - 1315152..1315598 (+) 447 WP_003131961.1 hypothetical protein -
  I6I21_RS06615 (I6I21_06615) - 1315686..1315958 (-) 273 WP_003131960.1 chorismate mutase -
  I6I21_RS06620 (I6I21_06620) - 1316042..1316530 (+) 489 WP_003131959.1 GAF domain-containing protein -
  I6I21_RS06625 (I6I21_06625) - 1316561..1317202 (+) 642 WP_003131958.1 phosphotransferase -
  I6I21_RS06630 (I6I21_06630) dnaX 1317251..1318909 (+) 1659 WP_003131957.1 DNA polymerase III subunit gamma/tau -
  I6I21_RS06635 (I6I21_06635) - 1318944..1320409 (-) 1466 Protein_1274 amino acid permease -
  I6I21_RS06640 (I6I21_06640) - 1320932..1321786 (+) 855 WP_003131955.1 undecaprenyl-diphosphate phosphatase -
  I6I21_RS06645 (I6I21_06645) rpsF 1321978..1322271 (+) 294 WP_003131954.1 30S ribosomal protein S6 -
  I6I21_RS06650 (I6I21_06650) ssb 1322301..1322801 (+) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  I6I21_RS06655 (I6I21_06655) rpsR 1322974..1323219 (+) 246 WP_003131952.1 30S ribosomal protein S18 -
  I6I21_RS06660 (I6I21_06660) - 1323419..1324192 (+) 774 WP_003131951.1 metallophosphoesterase -
  I6I21_RS06665 (I6I21_06665) - 1324274..1324582 (-) 309 WP_014570833.1 DUF960 domain-containing protein -
  I6I21_RS06670 (I6I21_06670) - 1324620..1325468 (-) 849 WP_003131770.1 MurR/RpiR family transcriptional regulator -
  I6I21_RS06675 (I6I21_06675) gnd 1325832..1326737 (+) 906 WP_032398514.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=515965 I6I21_RS06650 WP_003131953.1 1322301..1322801(+) (ssb) [Lactococcus lactis strain FDAARGOS_1064]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=515965 I6I21_RS06650 WP_003131953.1 1322301..1322801(+) (ssb) [Lactococcus lactis strain FDAARGOS_1064]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373