Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | I6H62_RS07615 | Genome accession | NZ_CP065981 |
| Coordinates | 1398918..1399436 (-) | Length | 172 a.a. |
| NCBI ID | WP_041636241.1 | Uniprot ID | - |
| Organism | Macrococcoides caseolyticum strain FDAARGOS_1005 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1386369..1437504 | 1398918..1399436 | within | 0 |
Gene organization within MGE regions
Location: 1386369..1437504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6H62_RS07540 (I6H62_07540) | - | 1386369..1386737 (-) | 369 | WP_101042031.1 | nuclear transport factor 2 family protein | - |
| I6H62_RS07545 (I6H62_07545) | - | 1387132..1387311 (+) | 180 | WP_086043593.1 | hypothetical protein | - |
| I6H62_RS07550 (I6H62_07550) | - | 1387388..1387591 (+) | 204 | WP_101042030.1 | DUF6366 family protein | - |
| I6H62_RS07555 (I6H62_07555) | - | 1387677..1388636 (-) | 960 | WP_198479334.1 | IS30 family transposase | - |
| I6H62_RS07560 (I6H62_07560) | - | 1388761..1389168 (+) | 408 | Protein_1452 | tyrosine-type recombinase/integrase | - |
| I6H62_RS07565 (I6H62_07565) | - | 1389165..1389425 (+) | 261 | WP_101042028.1 | hypothetical protein | - |
| I6H62_RS07570 (I6H62_07570) | - | 1389437..1389826 (+) | 390 | WP_101042027.1 | hypothetical protein | - |
| I6H62_RS07575 (I6H62_07575) | - | 1389994..1391135 (+) | 1142 | WP_198479331.1 | IS3 family transposase | - |
| I6H62_RS07580 (I6H62_07580) | guaA | 1391215..1392756 (-) | 1542 | WP_015912440.1 | glutamine-hydrolyzing GMP synthase | - |
| I6H62_RS07585 (I6H62_07585) | guaB | 1392820..1394289 (-) | 1470 | WP_133453264.1 | IMP dehydrogenase | - |
| I6H62_RS07590 (I6H62_07590) | - | 1394334..1395602 (-) | 1269 | WP_198479335.1 | nucleobase:cation symporter-2 family protein | - |
| I6H62_RS07595 (I6H62_07595) | xpt | 1395602..1396186 (-) | 585 | WP_099482390.1 | xanthine phosphoribosyltransferase | - |
| I6H62_RS07600 (I6H62_07600) | - | 1396690..1397709 (+) | 1020 | WP_133453258.1 | DUF2382 domain-containing protein | - |
| I6H62_RS07605 (I6H62_07605) | - | 1397810..1398424 (+) | 615 | WP_165980784.1 | GNAT family N-acetyltransferase | - |
| I6H62_RS07610 (I6H62_07610) | rpsR | 1398643..1398885 (-) | 243 | WP_041636240.1 | 30S ribosomal protein S18 | - |
| I6H62_RS07615 (I6H62_07615) | ssbA | 1398918..1399436 (-) | 519 | WP_041636241.1 | single-stranded DNA-binding protein | Machinery gene |
| I6H62_RS07620 (I6H62_07620) | rpsF | 1399461..1399751 (-) | 291 | WP_099482228.1 | 30S ribosomal protein S6 | - |
| I6H62_RS07625 (I6H62_07625) | - | 1399888..1400205 (-) | 318 | WP_101141212.1 | hypothetical protein | - |
| I6H62_RS07630 (I6H62_07630) | ychF | 1400229..1401329 (-) | 1101 | WP_103214503.1 | redox-regulated ATPase YchF | - |
| I6H62_RS07635 (I6H62_07635) | - | 1401348..1401536 (-) | 189 | WP_086039342.1 | DUF951 domain-containing protein | - |
| I6H62_RS07640 (I6H62_07640) | - | 1401538..1402425 (-) | 888 | WP_086039343.1 | mechanosensitive ion channel family protein | - |
| I6H62_RS07645 (I6H62_07645) | - | 1402426..1403289 (-) | 864 | WP_103214504.1 | ParB/RepB/Spo0J family partition protein | - |
| I6H62_RS07650 (I6H62_07650) | - | 1403282..1404043 (-) | 762 | WP_101141208.1 | ParA family protein | - |
| I6H62_RS07655 (I6H62_07655) | noc | 1404181..1405020 (-) | 840 | WP_103214505.1 | nucleoid occlusion protein | - |
| I6H62_RS07660 (I6H62_07660) | rsmG | 1405050..1405766 (-) | 717 | WP_101141204.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| I6H62_RS07665 (I6H62_07665) | mnmG | 1405767..1407641 (-) | 1875 | WP_015912453.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| I6H62_RS07670 (I6H62_07670) | mnmE | 1407654..1409033 (-) | 1380 | WP_101142916.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| I6H62_RS07675 (I6H62_07675) | jag | 1409155..1409898 (-) | 744 | WP_232618416.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| I6H62_RS07680 (I6H62_07680) | rnpA | 1409915..1410262 (-) | 348 | WP_015912456.1 | ribonuclease P protein component | - |
| I6H62_RS07685 (I6H62_07685) | rpmH | 1410361..1410498 (-) | 138 | WP_041636245.1 | 50S ribosomal protein L34 | - |
| I6H62_RS07690 (I6H62_07690) | dnaA | 1410973..1412310 (+) | 1338 | WP_101141200.1 | chromosomal replication initiator protein DnaA | - |
| I6H62_RS07695 (I6H62_07695) | dnaN | 1412484..1413617 (+) | 1134 | WP_101141198.1 | DNA polymerase III subunit beta | - |
| I6H62_RS07700 (I6H62_07700) | - | 1413714..1414610 (+) | 897 | WP_012655914.1 | ABC transporter ATP-binding protein | - |
| I6H62_RS07705 (I6H62_07705) | - | 1414603..1415844 (+) | 1242 | WP_101143436.1 | ABC transporter permease | - |
| I6H62_RS07710 (I6H62_07710) | - | 1415934..1416641 (+) | 708 | WP_101141194.1 | DsbA family protein | - |
| I6H62_RS07715 (I6H62_07715) | - | 1416638..1417054 (+) | 417 | WP_198479336.1 | disulfide oxidoreductase | - |
| I6H62_RS07720 (I6H62_07720) | yaaA | 1417193..1417414 (+) | 222 | WP_041635745.1 | S4 domain-containing protein YaaA | - |
| I6H62_RS07725 (I6H62_07725) | recF | 1417411..1418520 (+) | 1110 | WP_101141193.1 | DNA replication/repair protein RecF | - |
| I6H62_RS07730 (I6H62_07730) | gyrB | 1418528..1420456 (+) | 1929 | WP_181451721.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| I6H62_RS07735 (I6H62_07735) | gyrA | 1420484..1423120 (+) | 2637 | WP_198479337.1 | DNA gyrase subunit A | - |
| I6H62_RS07740 (I6H62_07740) | alsS | 1423316..1424983 (+) | 1668 | WP_101141190.1 | acetolactate synthase AlsS | - |
| I6H62_RS07745 (I6H62_07745) | budA | 1424994..1425695 (+) | 702 | WP_101141188.1 | acetolactate decarboxylase | - |
| I6H62_RS07750 (I6H62_07750) | - | 1425719..1426537 (-) | 819 | WP_103214680.1 | NAD(P)H-hydrate dehydratase | - |
| I6H62_RS07755 (I6H62_07755) | serS | 1426882..1428153 (+) | 1272 | WP_101141184.1 | serine--tRNA ligase | - |
| I6H62_RS07760 (I6H62_07760) | - | 1428381..1428896 (+) | 516 | WP_099482225.1 | YceI family protein | - |
| I6H62_RS07765 (I6H62_07765) | - | 1429028..1429939 (+) | 912 | WP_101141753.1 | DUF2232 domain-containing protein | - |
| I6H62_RS07770 (I6H62_07770) | - | 1429969..1431930 (+) | 1962 | WP_133453256.1 | DHH family phosphoesterase | - |
| I6H62_RS07775 (I6H62_07775) | rplI | 1431932..1432378 (+) | 447 | WP_012655928.1 | 50S ribosomal protein L9 | - |
| I6H62_RS07780 (I6H62_07780) | dnaB | 1432396..1433802 (+) | 1407 | WP_101141752.1 | replicative DNA helicase | - |
| I6H62_RS07785 (I6H62_07785) | - | 1434125..1435414 (+) | 1290 | WP_101141750.1 | adenylosuccinate synthase | - |
| I6H62_RS07790 (I6H62_07790) | - | 1435498..1436385 (-) | 888 | WP_101141695.1 | YitT family protein | - |
| I6H62_RS07805 (I6H62_07805) | yycF | 1436803..1437504 (+) | 702 | WP_012655932.1 | response regulator YycF | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19033.61 Da Isoelectric Point: 4.8835
>NTDB_id=515906 I6H62_RS07615 WP_041636241.1 1398918..1399436(-) (ssbA) [Macrococcoides caseolyticum strain FDAARGOS_1005]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKNTNQSRTNSPSDDYSSYDQGSYGQTQGQNQNYQSSNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKNTNQSRTNSPSDDYSSYDQGSYGQTQGQNQNYQSSNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=515906 I6H62_RS07615 WP_041636241.1 1398918..1399436(-) (ssbA) [Macrococcoides caseolyticum strain FDAARGOS_1005]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTTACTTTAGCAGTAAATAGAACATTTACTAATGCACAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTTAATAATTTCTTGCATAAAGGTAGTTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAAAGTATATGTTACTGAGGTCGTTTGTGATTCAGTTCAATTCCTTGAACCGAAGAA
CACTAATCAATCTCGTACAAACAGTCCGTCAGATGACTATTCTAGCTATGACCAAGGAAGTTATGGTCAGACACAAGGCC
AGAATCAAAACTATCAGTCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTTTAA
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTTACTTTAGCAGTAAATAGAACATTTACTAATGCACAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTTAATAATTTCTTGCATAAAGGTAGTTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAAAGTATATGTTACTGAGGTCGTTTGTGATTCAGTTCAATTCCTTGAACCGAAGAA
CACTAATCAATCTCGTACAAACAGTCCGTCAGATGACTATTCTAGCTATGACCAAGGAAGTTATGGTCAGACACAAGGCC
AGAATCAAAACTATCAGTCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.5 |
100 |
0.64 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.977 |
100 |
0.552 |
| ssb | Vibrio cholerae strain A1552 |
34.759 |
100 |
0.378 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |