Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KZH42_RS05300 Genome accession   NZ_CP079941
Coordinates   1045336..1046004 (+) Length   222 a.a.
NCBI ID   WP_002230433.1    Uniprot ID   Q9JZV4
Organism   Neisseria meningitidis strain C311     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1040336..1051004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH42_RS11990 - 1041028..1041135 (+) 108 Protein_1024 IS5/IS1182 family transposase -
  KZH42_RS05280 (KZH42_05280) - 1041180..1041512 (+) 333 WP_002225363.1 hypothetical protein -
  KZH42_RS05285 (KZH42_05285) - 1041844..1042353 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  KZH42_RS05290 (KZH42_05290) - 1042870..1043457 (-) 588 WP_002220670.1 superoxide dismutase -
  KZH42_RS05295 (KZH42_05295) dnaB 1043621..1045027 (+) 1407 WP_002225362.1 replicative DNA helicase -
  KZH42_RS05300 (KZH42_05300) pilH 1045336..1046004 (+) 669 WP_002230433.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KZH42_RS05305 (KZH42_05305) pilV 1046028..1046648 (+) 621 WP_002225360.1 type IV pilus modification protein PilV Regulator
  KZH42_RS05310 (KZH42_05310) pilJ 1046645..1047586 (+) 942 WP_002244084.1 PilW family protein Machinery gene
  KZH42_RS05315 (KZH42_05315) pilK 1047565..1048158 (+) 594 WP_002244085.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KZH42_RS05320 (KZH42_05320) pilX 1048163..1048636 (+) 474 WP_002225356.1 PilX family type IV pilin Machinery gene
  KZH42_RS05325 (KZH42_05325) - 1050405..1050773 (-) 369 Protein_1034 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24955.58 Da        Isoelectric Point: 9.7285

>NTDB_id=515863 KZH42_RS05300 WP_002230433.1 1045336..1046004(+) (pilH) [Neisseria meningitidis strain C311]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTEDVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTK
DQHLTKQSSFFYSDGYIQIVLTDAKAVSADEKKFRSAVVLINSSGRVEVCPRGDRRTMCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=515863 KZH42_RS05300 WP_002230433.1 1045336..1046004(+) (pilH) [Neisseria meningitidis strain C311]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGAGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAAACAATCCAGCTTTTTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGCCGATGAAAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

81.9

99.55

0.815