Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KZH42_RS05320 Genome accession   NZ_CP079941
Coordinates   1048163..1048636 (+) Length   157 a.a.
NCBI ID   WP_002225356.1    Uniprot ID   -
Organism   Neisseria meningitidis strain C311     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1043163..1053636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH42_RS05295 (KZH42_05295) dnaB 1043621..1045027 (+) 1407 WP_002225362.1 replicative DNA helicase -
  KZH42_RS05300 (KZH42_05300) pilH 1045336..1046004 (+) 669 WP_002230433.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KZH42_RS05305 (KZH42_05305) pilV 1046028..1046648 (+) 621 WP_002225360.1 type IV pilus modification protein PilV Regulator
  KZH42_RS05310 (KZH42_05310) pilJ 1046645..1047586 (+) 942 WP_002244084.1 PilW family protein Machinery gene
  KZH42_RS05315 (KZH42_05315) pilK 1047565..1048158 (+) 594 WP_002244085.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KZH42_RS05320 (KZH42_05320) pilX 1048163..1048636 (+) 474 WP_002225356.1 PilX family type IV pilin Machinery gene
  KZH42_RS05325 (KZH42_05325) - 1050405..1050773 (-) 369 Protein_1034 AzlC family ABC transporter permease -
  KZH42_RS05330 (KZH42_05330) dut 1050973..1051425 (+) 453 WP_002225353.1 dUTP diphosphatase -
  KZH42_RS05335 (KZH42_05335) dapC 1051503..1052690 (+) 1188 WP_002225352.1 succinyldiaminopimelate transaminase -
  KZH42_RS11995 - 1052779..1052904 (+) 126 Protein_1037 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17521.30 Da        Isoelectric Point: 9.4258

>NTDB_id=515867 KZH42_RS05320 WP_002225356.1 1048163..1048636(+) (pilX) [Neisseria meningitidis strain C311]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIENKLEIFVSGYKM
NPKIAKKYSVSVKFVDKEKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=515867 KZH42_RS05320 WP_002225356.1 1048163..1048636(+) (pilX) [Neisseria meningitidis strain C311]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCGAGAACAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATAAGGAAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

92.994

100

0.93
  pilL Neisseria gonorrhoeae MS11

88.535

100

0.885