Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   YSA_RS15655 Genome accession   NC_017986
Coordinates   3238999..3239544 (+) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida ND6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3233999..3244544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSA_RS15640 (YSA_05981) bfr 3234094..3234558 (+) 465 WP_003255449.1 bacterioferritin -
  YSA_RS15645 (YSA_05984) uvrA 3234631..3237465 (-) 2835 WP_003255448.1 excinuclease ABC subunit UvrA -
  YSA_RS15650 (YSA_05985) - 3237595..3238989 (+) 1395 WP_003255447.1 MFS transporter -
  YSA_RS15655 (YSA_05986) ssb 3238999..3239544 (+) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  YSA_RS15660 (YSA_05990) - 3239635..3241017 (-) 1383 WP_003255445.1 PLP-dependent aminotransferase family protein -
  YSA_RS15665 (YSA_05993) - 3241219..3242004 (+) 786 WP_017148059.1 TSUP family transporter -
  YSA_RS15670 (YSA_05994) - 3242026..3242787 (+) 762 WP_004576896.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=51584 YSA_RS15655 WP_003255446.1 3238999..3239544(+) (ssb) [Pseudomonas putida ND6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=51584 YSA_RS15655 WP_003255446.1 3238999..3239544(+) (ssb) [Pseudomonas putida ND6]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCATACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCTGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492

Multiple sequence alignment