Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CP157_RS09615 Genome accession   NZ_CP065892
Coordinates   1926331..1926846 (+) Length   171 a.a.
NCBI ID   WP_045999445.1    Uniprot ID   A0A5C4RBW8
Organism   Paracoccus marcusii strain CP157     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1921331..1931846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP157_RS09590 (CP157_01948) - 1922913..1923167 (+) 255 WP_217844520.1 hypothetical protein -
  CP157_RS09595 (CP157_01949) - 1923167..1923568 (+) 402 WP_217844521.1 MAPEG family protein -
  CP157_RS09600 (CP157_01950) lpdA 1923631..1925019 (+) 1389 WP_217844522.1 dihydrolipoyl dehydrogenase -
  CP157_RS09605 (CP157_01951) - 1925012..1925533 (+) 522 WP_232303257.1 lytic transglycosylase domain-containing protein -
  CP157_RS09610 (CP157_01952) - 1925537..1926157 (-) 621 WP_045999444.1 lytic transglycosylase domain-containing protein -
  CP157_RS09615 (CP157_01953) ssb 1926331..1926846 (+) 516 WP_045999445.1 single-stranded DNA-binding protein Machinery gene
  CP157_RS09620 (CP157_01954) - 1927074..1928120 (+) 1047 WP_217844523.1 Leu/Phe/Val dehydrogenase -
  CP157_RS09625 (CP157_01955) aroB 1928197..1929303 (-) 1107 WP_194885339.1 3-dehydroquinate synthase -
  CP157_RS09630 (CP157_01956) - 1929300..1929851 (-) 552 WP_240542382.1 shikimate kinase -
  CP157_RS09635 (CP157_01957) - 1929978..1931594 (+) 1617 WP_217844524.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17912.60 Da        Isoelectric Point: 5.9567

>NTDB_id=515118 CP157_RS09615 WP_045999445.1 1926331..1926846(+) (ssb) [Paracoccus marcusii strain CP157]
MAGSVNKVILVGNLGRDPEIRSFQNGGKVANLRIATSENWKDRTTGERKERTEWHTVAIFNEGLVGVVERYLKKGSKVYV
EGQLETRKWQDQSGQDRYSTEIVLRGIGGTLTMLDGASGGGGGMGGGGMGGGGRDSGGYDDYNQGGGSSSSRGGGGGQGG
GRADYDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=515118 CP157_RS09615 WP_045999445.1 1926331..1926846(+) (ssb) [Paracoccus marcusii strain CP157]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGCCGCGACCCGGAAATCCGCAGCTTTCAGAACGGCGG
CAAGGTCGCGAACCTGCGCATCGCCACCTCCGAGAACTGGAAGGACCGCACCACCGGAGAGCGCAAGGAGCGCACCGAGT
GGCACACCGTCGCCATCTTCAACGAGGGCCTGGTGGGCGTCGTCGAACGCTATCTGAAAAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACCGCTACTCGACCGAGATCGTCCTGCGCGGCAT
CGGCGGCACGCTGACCATGCTGGACGGCGCCAGCGGCGGTGGCGGCGGCATGGGTGGTGGCGGCATGGGCGGCGGTGGTC
GCGACAGCGGCGGCTATGACGACTATAACCAGGGCGGCGGATCGTCGTCGTCGCGCGGCGGCGGCGGCGGCCAGGGCGGC
GGACGCGCCGATTACGACGATGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C4RBW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.872

100

0.526
  ssb Vibrio cholerae strain A1552

49.133

100

0.497
  ssb Neisseria meningitidis MC58

37.569

100

0.398
  ssb Neisseria gonorrhoeae MS11

37.017

100

0.392