Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HIFGL_RS08745 Genome accession   NC_022356
Coordinates   1815531..1816538 (+) Length   335 a.a.
NCBI ID   WP_021035692.1    Uniprot ID   -
Organism   Haemophilus influenzae KR494     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1810531..1821538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIFGL_RS08720 (HifGL_001754) aspS 1811063..1812829 (+) 1767 WP_021035688.1 aspartate--tRNA ligase -
  HIFGL_RS08725 (HifGL_001755) nudB 1812851..1813327 (+) 477 WP_021035689.1 dihydroneopterin triphosphate diphosphatase -
  HIFGL_RS08730 (HifGL_001756) - 1813487..1814227 (+) 741 WP_005662961.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HIFGL_RS08735 (HifGL_001757) ruvC 1814274..1814846 (+) 573 WP_021035690.1 crossover junction endodeoxyribonuclease RuvC -
  HIFGL_RS08740 (HifGL_001758) ruvA 1814909..1815523 (+) 615 WP_021035691.1 Holliday junction branch migration protein RuvA -
  HIFGL_RS08745 (HifGL_001759) ruvB 1815531..1816538 (+) 1008 WP_021035692.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HIFGL_RS08750 (HifGL_001760) - 1816590..1816877 (-) 288 WP_005656308.1 DUF5339 domain-containing protein -
  HIFGL_RS08755 (HifGL_001761) xerD 1817050..1817943 (-) 894 WP_005654087.1 site-specific tyrosine recombinase XerD -
  HIFGL_RS08760 (HifGL_001762) - 1817973..1819139 (-) 1167 WP_021035693.1 3-phenylpropionate MFS transporter -
  HIFGL_RS08765 (HifGL_001763) proC 1819139..1819954 (-) 816 WP_021035694.1 pyrroline-5-carboxylate reductase -
  HIFGL_RS08770 (HifGL_001764) rdgC 1820020..1820928 (+) 909 WP_021035695.1 recombination-associated protein RdgC -
  HIFGL_RS08775 (HifGL_001765) ruvX 1820978..1821397 (-) 420 WP_021035696.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37048.40 Da        Isoelectric Point: 4.8547

>NTDB_id=51501 HIFGL_RS08745 WP_021035692.1 1815531..1816538(+) (ruvB) [Haemophilus influenzae KR494]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVNVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSKTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=51501 HIFGL_RS08745 WP_021035692.1 1815531..1816538(+) (ruvB) [Haemophilus influenzae KR494]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATTGACCGCGCTATTCGCCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAAATGGATATTTTCATCAAGGCTGCCAAACTCCGTCAAGATG
CCTTAGATCATTTGTTGATTTTTGGCCCTCCCGGTTTGGGAAAAACAACCCTTGCTAATATTGTGGCAAATGAAATGGGC
GTCAATATTCGTACGACATCGGGGCCAGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTAACTAATCTTGAACCGCA
CGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AATTAGATATTATGATTGGCGAAGGGCCAGCTGCTCGTTCTATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCGCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACCTCTATCGTGGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAGCAGGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGCAATGGGGGA
GTAATTTCGGTAAATGTGGCAAAACAAGCACTTTCAATGTTGGATGTAGATGATGCTGGATTTGATTATTTAGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGACCTGTGGGGCTGGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGGTTTTTACAAAGAACGCCACGTGGACGTATTGCA
ACATCGAAAACTTATCGCCATTTCGGTCTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae R6

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae D39

58.589

97.313

0.57
  ruvB Helicobacter pylori 26695

54.952

93.433

0.513
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507

Multiple sequence alignment