Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I8T81_RS01090 Genome accession   NZ_CP065820
Coordinates   239008..239595 (+) Length   195 a.a.
NCBI ID   WP_049065869.1    Uniprot ID   A0A2T5R1E9
Organism   Acinetobacter seifertii strain S21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 234008..244595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS01065 (I8T81_01065) - 234081..234887 (-) 807 WP_004884868.1 SDR family oxidoreductase -
  I8T81_RS01070 (I8T81_01070) - 234991..235362 (-) 372 WP_004704999.1 MerR family transcriptional regulator -
  I8T81_RS01075 (I8T81_01075) tenA 235427..236101 (-) 675 WP_039255497.1 thiaminase II -
  I8T81_RS01080 (I8T81_01080) - 236364..237446 (+) 1083 WP_004705003.1 DUF475 domain-containing protein -
  I8T81_RS01085 (I8T81_01085) - 237593..238957 (+) 1365 WP_004705005.1 MFS transporter -
  I8T81_RS01090 (I8T81_01090) ssb 239008..239595 (+) 588 WP_049065869.1 single-stranded DNA-binding protein Machinery gene
  I8T81_RS01095 (I8T81_01095) - 239813..240985 (+) 1173 WP_198071937.1 site-specific integrase -
  I8T81_RS01100 (I8T81_01100) - 240987..242567 (+) 1581 WP_265091521.1 tyrosine-type recombinase/integrase -
  I8T81_RS01105 (I8T81_01105) - 242564..244567 (+) 2004 WP_198071938.1 integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21194.95 Da        Isoelectric Point: 6.4822

>NTDB_id=514731 I8T81_RS01090 WP_049065869.1 239008..239595(+) (ssb) [Acinetobacter seifertii strain S21]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGNQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=514731 I8T81_RS01090 WP_049065869.1 239008..239595(+) (ssb) [Acinetobacter seifertii strain S21]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTAATCAAGGT
GGTTTTGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGATGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T5R1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.549
  ssb Vibrio cholerae strain A1552

45

100

0.462
  ssb Neisseria meningitidis MC58

36.869

100

0.374
  ssb Neisseria gonorrhoeae MS11

36.869

100

0.374