Detailed information NTG0514663

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: KX728_RS08250
• Genome accession: NZ_CP079724
• Coordinates: 1715138..1716136 (-)
• Length: 332 a.a.
• NCBI ID: WP_287639050.1
• Uniprot ID: -
• Organism: Streptococcus oralis strain 34
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1710138..1721136

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KX728_RS08230 (KX728_08225)	eeP	1711524..1712780 (-)	1257	WP_215804310.1	RIP metalloprotease RseP	Regulator
KX728_RS08235 (KX728_08230)	-	1712796..1713599 (-)	804	WP_000159119.1	phosphatidate cytidylyltransferase	-
KX728_RS08240 (KX728_08235)	-	1713608..1714366 (-)	759	WP_000466705.1	isoprenyl transferase	-
KX728_RS08245 (KX728_08240)	-	1714573..1715157 (-)	585	WP_215804309.1	nucleotidyltransferase family protein	-
KX728_RS08250 (KX728_08245)	ruvB	1715138..1716136 (-)	999	WP_287639050.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
KX728_RS08255 (KX728_08250)	-	1716424..1718835 (-)	2412	WP_215804308.1	flavocytochrome c	-
KX728_RS08260 (KX728_08255)	-	1718861..1719469 (-)	609	WP_132972735.1	NADPH-dependent FMN reductase	-
KX728_RS08265 (KX728_08260)	-	1719688..1720887 (+)	1200	WP_049519212.1	OFA family MFS transporter	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37293.70 Da
• Isoelectric Point: 4.4669

>NTDB_id=514663 KX728_RS08250 WP_287639050.1 1715138..1716136(-) (ruvB) [Streptococcus oralis strain 34]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDYAQIMGDGLID
DVITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYNEK

Nucleotide

• Length: 999 bp

>NTDB_id=514663 KX728_RS08250 WP_287639050.1 1715138..1716136(-) (ruvB) [Streptococcus oralis strain 34]
ATGAGTAGAATTTTAGATAATGAGATCATGGGGGATGAGGAGTTGGTAGAACGTACCCTCCGTCCTCAGTATTTACGTGA
ATATATTGGGCAGGATAAGGTCAAGGACCAGCTGCAAATCTTTATCGAAGCTGCCAAAATGCGGGATGAAGCGCTGGACC
ATGTGCTCTTATTTGGGCCTCCAGGTTTGGGGAAAACGACCATGGCCTTTGTTATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACTTCTGGTCCTGTTATCGAAAAAGCGGGTGATCTGGTAGCGATTTTGAATGATTTGGAGCCTGGAGACGTTCT
CTTTATTGACGAGATTCATCGCTTGCCCATGTCGGTGGAAGAGGTGCTTTATAGTGCCATGGAAGACTTCTACATTGATA
TCATGATTGGGGCGGGTGAAGGCAGTCGCAGTGTTCATTTGGACTTGCCACCATTCACCTTGATTGGTGCGACGACCCGT
GCGGGGATGCTCTCAAATCCTCTGCGGGCACGTTTTGGGATTACGGGTCATATGGAATACTATGCCCACGCTGACTTGAC
AGAGATTGTTGAGCGGACAGCAGATATTTTTGAGATGGAAATCACCCATGAGGCAGCTTCGGAGTTGGCCTTACGCAGTC
GAGGAACTCCTCGTATCGCCAATCGTCTCCTCAAGCGCGTGCGCGACTATGCCCAGATTATGGGGGATGGCTTGATTGAT
GATGTGATTACGGATAAGGCTTTGACCATGCTGGATGTAGACCGTGAAGGTTTGGACTATGTAGACCAAAAAATCCTTCG
CACCATGATTGAGATGTACGGTGGTGGTCCTGTCGGTTTAGGAACTCTTTCTGTTAATATTGCCGAGGAGCGTGAGACAG
TCGAAGATATGTACGAACCTTACTTGATTCAAAAAGGTTTTATCATGCGAACTCGTTCAGGACGAGTTGCGACCGCTAAG
GCTTACGAGCATTTGGGGTATGAGTATAATGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	97.59	100	0.976
ruvB	Streptococcus pneumoniae R6	97.289	100	0.973
ruvB	Streptococcus pneumoniae D39	97.289	100	0.973
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.043	98.193	0.599
ruvB	Helicobacter pylori 26695	51.084	97.289	0.497
ruvB	Synechocystis sp. PCC 6803	48.494	100	0.485