Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I8N73_RS08375 Genome accession   NZ_CP065791
Coordinates   1683598..1684497 (+) Length   299 a.a.
NCBI ID   WP_199022519.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM279     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1678598..1689497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N73_RS08355 (I8N73_08355) - 1679288..1680991 (+) 1704 WP_094032434.1 glycosyl transferase -
  I8N73_RS08360 (I8N73_08360) - 1680988..1681269 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  I8N73_RS08365 (I8N73_08365) sucC 1681444..1682601 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  I8N73_RS08370 (I8N73_08370) sucD 1682630..1683532 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  I8N73_RS08375 (I8N73_08375) dprA 1683598..1684497 (+) 900 WP_199022519.1 DNA-processing protein DprA Machinery gene
  I8N73_RS08380 (I8N73_08380) topA 1684679..1686754 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  I8N73_RS08385 (I8N73_08385) trmFO 1686819..1688126 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I8N73_RS08390 (I8N73_08390) xerC 1688196..1689113 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32765.88 Da        Isoelectric Point: 7.5071

>NTDB_id=514542 I8N73_RS08375 WP_199022519.1 1683598..1684497(+) (dprA) [Bacillus velezensis strain LBUM279]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIEGKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=514542 I8N73_RS08375 WP_199022519.1 1683598..1684497(+) (dprA) [Bacillus velezensis strain LBUM279]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGGGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368