Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I8N73_RS11605 Genome accession   NZ_CP065791
Coordinates   2379381..2379989 (+) Length   202 a.a.
NCBI ID   WP_007409489.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM279     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2374381..2384989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N73_RS11565 (I8N73_11565) - 2375438..2375944 (-) 507 WP_012117833.1 PTS sugar transporter subunit IIA -
  I8N73_RS11570 (I8N73_11570) - 2376082..2376495 (+) 414 WP_039254739.1 Hsp20/alpha crystallin family protein -
  I8N73_RS11575 (I8N73_11575) - 2376525..2376956 (-) 432 WP_144664613.1 YppG family protein -
  I8N73_RS11580 (I8N73_11580) - 2377143..2377325 (+) 183 WP_003153532.1 YppF family protein -
  I8N73_RS11585 (I8N73_11585) - 2377364..2377732 (-) 369 WP_007409492.1 YppE family protein -
  I8N73_RS11590 (I8N73_11590) - 2377778..2378023 (-) 246 WP_007409491.1 DUF5446 family protein -
  I8N73_RS11595 (I8N73_11595) sspM 2378229..2378333 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  I8N73_RS11600 (I8N73_11600) - 2378377..2379339 (-) 963 WP_108724853.1 DUF2515 domain-containing protein -
  I8N73_RS11605 (I8N73_11605) recU 2379381..2379989 (+) 609 WP_007409489.1 Holliday junction resolvase RecU Machinery gene
  I8N73_RS11610 (I8N73_11610) - 2380028..2382811 (+) 2784 WP_199022003.1 PBP1A family penicillin-binding protein -
  I8N73_RS11615 (I8N73_11615) - 2382888..2383379 (-) 492 WP_144664610.1 YpoC family protein -
  I8N73_RS11620 (I8N73_11620) nth 2383376..2384035 (-) 660 WP_007612187.1 endonuclease III -
  I8N73_RS11625 (I8N73_11625) dnaD 2384054..2384752 (-) 699 WP_060674319.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.81 Da        Isoelectric Point: 9.5778

>NTDB_id=514546 I8N73_RS11605 WP_007409489.1 2379381..2379989(+) (recU) [Bacillus velezensis strain LBUM279]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLVNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=514546 I8N73_RS11605 WP_007409489.1 2379381..2379989(+) (recU) [Bacillus velezensis strain LBUM279]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGTTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891