Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLNZ_RS12415 | Genome accession | NC_017949 |
| Coordinates | 2432141..2432641 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris subsp. cremoris NZ9000 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2427141..2437641
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLNZ_RS12390 (LLNZ_12760) | gnd | 2428266..2429171 (-) | 906 | WP_011836101.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLNZ_RS12395 (LLNZ_12765) | - | 2429541..2430389 (+) | 849 | WP_011836102.1 | MurR/RpiR family transcriptional regulator | - |
| LLNZ_RS12400 (LLNZ_12770) | - | 2430428..2430736 (+) | 309 | WP_011836103.1 | DUF960 domain-containing protein | - |
| LLNZ_RS12405 (LLNZ_12775) | - | 2430808..2431593 (-) | 786 | WP_011836104.1 | metallophosphoesterase | - |
| LLNZ_RS12410 (LLNZ_12780) | rpsR | 2431724..2431969 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLNZ_RS12415 (LLNZ_12785) | ssb | 2432141..2432641 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| LLNZ_RS12420 (LLNZ_12790) | rpsF | 2432671..2432964 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| LLNZ_RS12425 (LLNZ_12795) | - | 2433158..2434012 (-) | 855 | WP_011836105.1 | undecaprenyl-diphosphate phosphatase | - |
| LLNZ_RS12430 (LLNZ_12800) | - | 2434534..2436000 (+) | 1467 | WP_014735185.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=51445 LLNZ_RS12415 WP_011677241.1 2432141..2432641(-) (ssb) [Lactococcus cremoris subsp. cremoris NZ9000]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=51445 LLNZ_RS12415 WP_011677241.1 2432141..2432641(-) (ssb) [Lactococcus cremoris subsp. cremoris NZ9000]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
AACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGATCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
AACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |