Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KV381_RS27730 Genome accession   NZ_CP079114
Coordinates   6308372..6309994 (+) Length   540 a.a.
NCBI ID   WP_030085074.1    Uniprot ID   -
Organism   Streptomyces sp. WY228     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6303372..6314994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS27695 (KV381_27695) lepB 6303532..6304302 (+) 771 WP_030085062.1 signal peptidase I -
  KV381_RS27700 (KV381_27700) lepB 6304295..6305374 (+) 1080 WP_030085064.1 signal peptidase I -
  KV381_RS27705 (KV381_27705) lepB 6305274..6306188 (+) 915 WP_030085066.1 signal peptidase I -
  KV381_RS27710 (KV381_27710) lepB 6306238..6306993 (+) 756 WP_030629533.1 signal peptidase I -
  KV381_RS27715 (KV381_27715) - 6306990..6307478 (+) 489 WP_030085070.1 NUDIX hydrolase -
  KV381_RS27720 (KV381_27720) - 6307543..6307851 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  KV381_RS27725 (KV381_27725) - 6308013..6308372 (+) 360 WP_218786626.1 YraN family protein -
  KV381_RS27730 (KV381_27730) comM 6308372..6309994 (+) 1623 WP_030085074.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KV381_RS27735 (KV381_27735) dprA 6310576..6311688 (+) 1113 WP_103538706.1 DNA-processing protein DprA -
  KV381_RS27740 (KV381_27740) whiG 6311943..6312779 (+) 837 WP_030085080.1 RNA polymerase sigma factor WhiG -
  KV381_RS27745 (KV381_27745) - 6312908..6313477 (+) 570 WP_218787311.1 TetR/AcrR family transcriptional regulator -
  KV381_RS27750 (KV381_27750) - 6313416..6314219 (-) 804 WP_218786627.1 murein hydrolase activator EnvC -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 55623.84 Da        Isoelectric Point: 6.5064

>NTDB_id=514222 KV381_RS27730 WP_030085074.1 6308372..6309994(+) (comM) [Streptomyces sp. WY228]
MGFARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVASAVLGAAERIDPAAIAEVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYEQVVVPEQSAGEAALVPGISVLGVRS
LRQLIAVLCDEPVPEEPADDQGRPDAMLAGLMIPGTGLGAGLAPAAARGDGHRPDLADVAGQPRPRRALEVAAAGGHHLL
FSGPPGAGKTMLAERLSAVLPPLTRQESLEVTAVHSVAGILPPGEPLVSRAPYCAPHHSATMQSLVGGGNGIPRPGAVSL
AHRGVLFLDEAPEFSGKALDALRQPLESGHVVVARAAGVVRLPARFLMVLAANPCPCGRHTLTGAGCECPPSVVRRYQAR
LSGPLLDRVDLRVEVEPVDRADLLGQGGRGESTAVVAARVRDARARAAERLAGTPWTTNSEVPGHELRTRLLAAPGALAA
AERDLERGILTARGLDRVLRVAWTVADLRGADRPDDSDVAVALELRTGIQRGVPMGAGER

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=514222 KV381_RS27730 WP_030085074.1 6308372..6309994(+) (comM) [Streptomyces sp. WY228]
ATGGGCTTCGCACGAGCGTGTTCCGTGGCGCTGGTCGGCGTCGAGGGTGTGGTGGTGGAGGTCCAGGCGGATCTGGAGCC
GGGGGTGGCGGCCTTCACCCTGGTCGGGCTGCCGGACAAGAGCCTGGTGGAGAGCCGGGACCGGGTGCGGGCCGCGGTGG
TCAACTCCGGGGCCGAGTGGCCGCAGAAGAAGCTCACGGTCGGGCTCTCGCCGGCCTCCGTGCCGAAGAGCGGCTCGGGC
TTCGATCTCGCCGTCGCGAGCGCGGTCCTCGGCGCGGCGGAGCGGATCGACCCCGCGGCGATCGCCGAAGTGGTGATGAT
CGGCGAACTGGGTCTGGACGGCCGGGTCCGTCCGGTCCGGGGCGTGCTGCCCGCCGTCCTGGCGGCGGCCGAAGCGGGGT
ACGAGCAGGTCGTCGTTCCCGAGCAGTCGGCCGGGGAGGCGGCGCTGGTGCCGGGGATCTCGGTCCTCGGGGTCCGGAGC
CTGCGCCAGCTCATCGCGGTTCTGTGCGACGAACCGGTGCCCGAGGAACCCGCGGACGACCAGGGGCGCCCCGACGCCAT
GCTGGCCGGGCTCATGATTCCCGGTACGGGCCTCGGCGCGGGGCTTGCCCCGGCCGCCGCGCGCGGTGACGGTCACCGGC
CGGACCTGGCGGACGTCGCGGGGCAGCCGCGCCCGCGCCGGGCCCTGGAGGTGGCTGCGGCCGGCGGACACCATCTGCTC
TTCTCGGGCCCGCCGGGCGCGGGCAAGACCATGCTGGCCGAGCGGTTGTCGGCGGTCCTGCCGCCGCTGACCCGGCAGGA
ATCCCTCGAAGTGACGGCGGTCCACTCCGTGGCGGGCATCCTCCCCCCGGGTGAACCGCTCGTCTCCAGAGCGCCCTACT
GCGCCCCGCACCACTCGGCGACCATGCAGTCCCTGGTCGGCGGCGGCAATGGCATCCCGAGGCCCGGGGCGGTGTCCCTG
GCCCATCGCGGGGTCCTCTTCCTCGACGAGGCCCCGGAATTCTCGGGCAAGGCCCTGGACGCGCTGCGCCAGCCCCTGGA
GTCCGGTCATGTGGTGGTCGCGCGGGCGGCTGGCGTGGTGCGGCTGCCCGCCCGGTTCCTGATGGTGCTGGCCGCCAACC
CGTGTCCGTGCGGCCGGCACACGCTCACCGGCGCGGGCTGCGAATGCCCGCCCTCGGTGGTCCGCCGCTACCAGGCGCGC
CTGTCCGGGCCGCTGCTCGACCGGGTGGACCTGCGGGTCGAGGTGGAGCCGGTCGACCGCGCGGACCTGCTGGGGCAGGG
CGGCCGGGGCGAGTCGACGGCCGTCGTCGCCGCTCGGGTACGGGACGCCAGGGCGCGGGCGGCCGAGCGGCTGGCCGGCA
CCCCGTGGACCACGAACAGCGAGGTGCCCGGCCATGAGCTGCGGACCCGGCTGCTCGCGGCCCCGGGAGCGCTGGCGGCG
GCGGAGCGGGACCTGGAGCGCGGCATCCTCACGGCCCGGGGCCTGGACCGGGTGCTGAGGGTGGCCTGGACCGTGGCGGA
CCTGCGGGGTGCGGACCGCCCGGACGACTCCGATGTGGCGGTCGCCCTGGAACTGCGGACGGGCATCCAGCGCGGGGTGC
CGATGGGGGCGGGGGAGCGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

41.406

94.815

0.393
  comM Vibrio cholerae strain A1552

41.406

94.815

0.393
  comM Vibrio campbellii strain DS40M4

40.114

97.407

0.391
  comM Acinetobacter baylyi ADP1

39.474

98.519

0.389
  comM Haemophilus influenzae Rd KW20

38.973

97.407

0.38
  comM Glaesserella parasuis strain SC1401

37.925

98.148

0.372