Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KV188_RS09155 Genome accession   NZ_CP078508
Coordinates   1884217..1884822 (+) Length   201 a.a.
NCBI ID   WP_005600357.1    Uniprot ID   A0A9X4G287
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879217..1889822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV188_RS09140 (KV188_09140) potA 1881345..1882460 (+) 1116 WP_005600350.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  KV188_RS09145 (KV188_09145) potB 1882447..1883313 (+) 867 WP_005603539.1 spermidine/putrescine ABC transporter permease PotB -
  KV188_RS09150 (KV188_09150) potC 1883313..1884080 (+) 768 WP_039708954.1 spermidine/putrescine ABC transporter permease PotC -
  KV188_RS09155 (KV188_09155) ruvA 1884217..1884822 (+) 606 WP_005600357.1 Holliday junction branch migration protein RuvA Machinery gene
  KV188_RS09160 (KV188_09160) ruvB 1884841..1885845 (+) 1005 WP_005600359.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KV188_RS09165 (KV188_09165) ubiG 1885902..1886606 (-) 705 WP_039708955.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  KV188_RS09170 (KV188_09170) gyrA 1886786..1889476 (+) 2691 WP_039708956.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22065.58 Da        Isoelectric Point: 6.7667

>NTDB_id=514060 KV188_RS09155 WP_005600357.1 1884217..1884822(+) (ruvA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNG
VGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKTAERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDPADE
ARDALVALGYKLADAEKMIKKVNKAGATSEQLIREALKASL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=514060 KV188_RS09155 WP_005600357.1 1884217..1884822(+) (ruvA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGATCGGAAGATTACACGGTAAAATTATTGAAAAACAACCGCCTGAAATGGTAATTGATGTCCAAGGTGTCGGGTATGA
AGTGCTATTGCCGATGACGAGCTTTTACAGCTTGCCGCAAGTAGGTGAAGAAGCCACTATTTTTACGCATTTAGTCGTAC
GTGAAGATGCACATTTATTATTTGGTTTTGCACAAAAGCAAGATAGAACTTTATTTCGTGAATTGATTAAAACCAACGGT
GTAGGGCCTAAATTAGCCCTTGCGATTTTATCAGCAATGTCAGTTTCACAATTTGCCAATGCTGTTGAAAATGAAGAACT
TGCCAAATTAACTAAAATTCCGGGCATTGGGCGTAAGACAGCCGAGCGTTTATTAGTAGAACTCAAAGGCAAATTCAAAG
GTGTGGCACAAAGTGATTTCTTTGAAGAGCATTCGGTTGAAACGATTGTTGCAACACATTCGCACGATCCGGCAGATGAA
GCCCGTGATGCCTTAGTGGCGTTAGGCTATAAACTCGCTGATGCTGAGAAGATGATTAAGAAAGTGAATAAAGCGGGTGC
AACCAGCGAACAATTAATTCGTGAAGCATTAAAAGCCTCTCTTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(157-199)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X4G287

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.383
  ruvA Streptococcus pneumoniae TIGR4

37.374

98.507

0.368
  ruvA Streptococcus pneumoniae R6

36.869

98.507

0.363
  ruvA Streptococcus pneumoniae D39

36.869

98.507

0.363