Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G47_RS20545 Genome accession   NZ_CP065748
Coordinates   4402111..4402677 (+) Length   188 a.a.
NCBI ID   WP_016449346.1    Uniprot ID   -
Organism   Delftia lacustris strain FDAARGOS_890     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4397111..4407677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G47_RS20535 (I6G47_20535) uvrA 4397395..4400502 (-) 3108 WP_016449348.1 excinuclease ABC subunit UvrA -
  I6G47_RS20540 (I6G47_20540) - 4400776..4401951 (+) 1176 WP_034348262.1 MFS transporter -
  I6G47_RS20545 (I6G47_20545) ssb 4402111..4402677 (+) 567 WP_016449346.1 single-stranded DNA-binding protein Machinery gene
  I6G47_RS20550 (I6G47_20550) - 4402764..4403261 (+) 498 WP_016449345.1 hypothetical protein -
  I6G47_RS20555 (I6G47_20555) - 4403588..4405042 (+) 1455 WP_413540522.1 SulP family inorganic anion transporter -
  I6G47_RS33895 - 4405439..4405747 (+) 309 WP_227469571.1 hypothetical protein -
  I6G47_RS20565 (I6G47_20565) - 4405750..4406442 (+) 693 WP_016449342.1 hypothetical protein -
  I6G47_RS20570 (I6G47_20570) paaE 4406476..4407573 (-) 1098 WP_016449341.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20403.55 Da        Isoelectric Point: 5.9554

>NTDB_id=513917 I6G47_RS20545 WP_016449346.1 4402111..4402677(+) (ssb) [Delftia lacustris strain FDAARGOS_890]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=513917 I6G47_RS20545 WP_016449346.1 4402111..4402677(+) (ssb) [Delftia lacustris strain FDAARGOS_890]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGATCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAAGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTATGGCGATGAAGGCTATGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCTCCCGCACCCATGGCTCCCCCGCCGCAGCGCGCAGCCTCGGGCTTTGACGACATGGATGACGACATTCC
GTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.553
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.463
  ssb Neisseria meningitidis MC58

44.974

100

0.452