Detailed information NTG0513869

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6G90_RS13955
• Genome accession: NZ_CP065745
• Coordinates: 3077161..3078033 (+)
• Length: 290 a.a.
• NCBI ID: WP_197927991.1
• Uniprot ID: A0A7T2ULJ2
• Organism: Aeromonas allosaccharophila strain FDAARGOS_933
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3072161..3083033

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G90_RS13935 (I6G90_13930)	nadC	3072434..3073297 (+)	864	WP_197927985.1	carboxylating nicotinate-nucleotide diphosphorylase	-
I6G90_RS13940 (I6G90_13935)	-	3073613..3073993 (+)	381	WP_197927987.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
I6G90_RS13945 (I6G90_13940)	pilB	3073997..3075703 (+)	1707	WP_197927989.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6G90_RS13950 (I6G90_13945)	pilC	3075858..3077099 (+)	1242	WP_139406689.1	type II secretion system F family protein	Machinery gene
I6G90_RS13955 (I6G90_13950)	pilD	3077161..3078033 (+)	873	WP_197927991.1	A24 family peptidase	Machinery gene
I6G90_RS13960 (I6G90_13955)	coaE	3078047..3078661 (+)	615	WP_197927993.1	dephospho-CoA kinase	-
I6G90_RS13965 (I6G90_13960)	zapD	3078699..3079421 (+)	723	WP_042058692.1	cell division protein ZapD	-
I6G90_RS13970 (I6G90_13965)	yacG	3079434..3079628 (+)	195	WP_033138127.1	DNA gyrase inhibitor YacG	-
I6G90_RS13975 (I6G90_13970)	mutT	3079706..3080110 (-)	405	WP_197927995.1	8-oxo-dGTP diphosphatase MutT	-
I6G90_RS13980 (I6G90_13975)	secA	3080296..3083016 (-)	2721	WP_197927996.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32102.34 Da
• Isoelectric Point: 6.4856

>NTDB_id=513869 I6G90_RS13955 WP_197927991.1 3077161..3078033(+) (pilD) [Aeromonas allosaccharophila strain FDAARGOS_933]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEQEWQAEYRSYFAPDEEATAPEHYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWSTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=513869 I6G90_RS13955 WP_197927991.1 3077161..3078033(+) (pilD) [Aeromonas allosaccharophila strain FDAARGOS_933]
ATGACACTTCTTCTCGAGCTGGCTCACGGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGTTTCCTTAACGTGGTAATCCATCGCCTGCCCATCATGCTGGAGCAGGAGTGGCAGGCCGAGTATCGCAGCTACTTCG
CCCCCGATGAGGAGGCCACTGCGCCAGAGCACTACAACCTGATGGTACCGCGATCCGCATGCCCTCACTGTGGTCACGCC
ATCACTGCGCTCGAAAACATCCCACTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGTGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCTGTTGCTATGGTGATTACACCGGGATGGAGCA
CGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCAGACCAG
CTCACCCTGCCACTCCTGTGGGGCGGGCTGCTGTTCAATTTGGCAGGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCTATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAGGGGATGGGTTATG
GCGACTTCAAGCTGCTGGCAGCCCTCGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATTATTCTGCTGCTCTCATCCCTG
GTCGGCGCGGTGATCGGCATCAGCCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCTTTCGGCCCCTACCT
CGCTATCGCGGGCTGGATCGCCCTGTTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

3D structure

• AlphaFold DB: A0A7T2ULJ2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.14	98.621	0.593
pilD	Vibrio campbellii strain DS40M4	56.098	98.966	0.555
pilD	Acinetobacter nosocomialis M2	54.851	92.414	0.507
pilD	Acinetobacter baumannii D1279779	54.478	92.414	0.503
pilD	Neisseria gonorrhoeae MS11	49.248	91.724	0.452