Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6G25_RS09140 Genome accession   NZ_CP065729
Coordinates   1722046..1722564 (-) Length   172 a.a.
NCBI ID   WP_041636241.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain FDAARGOS_868     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1717046..1727564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G25_RS09115 (I6G25_09090) - 1717462..1718730 (-) 1269 WP_101141217.1 nucleobase:cation symporter-2 family protein -
  I6G25_RS09120 (I6G25_09095) xpt 1718730..1719314 (-) 585 WP_015912443.1 xanthine phosphoribosyltransferase -
  I6G25_RS09125 (I6G25_09100) - 1719818..1720837 (+) 1020 WP_101141215.1 DUF2382 domain-containing protein -
  I6G25_RS09130 (I6G25_09105) - 1720938..1721552 (+) 615 WP_157821012.1 GNAT family N-acetyltransferase -
  I6G25_RS09135 (I6G25_09110) rpsR 1721771..1722013 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  I6G25_RS09140 (I6G25_09115) ssbA 1722046..1722564 (-) 519 WP_041636241.1 single-stranded DNA-binding protein Machinery gene
  I6G25_RS09145 (I6G25_09120) rpsF 1722589..1722879 (-) 291 WP_099482228.1 30S ribosomal protein S6 -
  I6G25_RS09150 (I6G25_09125) - 1723016..1723333 (-) 318 WP_101141212.1 hypothetical protein -
  I6G25_RS09155 (I6G25_09130) ychF 1723357..1724457 (-) 1101 WP_103214503.1 redox-regulated ATPase YchF -
  I6G25_RS09160 (I6G25_09135) - 1724476..1724664 (-) 189 WP_086039342.1 DUF951 domain-containing protein -
  I6G25_RS09165 (I6G25_09140) - 1724666..1725553 (-) 888 WP_086039343.1 mechanosensitive ion channel family protein -
  I6G25_RS09170 (I6G25_09145) - 1725554..1726417 (-) 864 WP_103214504.1 ParB/RepB/Spo0J family partition protein -
  I6G25_RS09175 (I6G25_09150) - 1726410..1727171 (-) 762 WP_101141208.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.61 Da        Isoelectric Point: 4.8835

>NTDB_id=513646 I6G25_RS09140 WP_041636241.1 1722046..1722564(-) (ssbA) [Macrococcoides caseolyticum strain FDAARGOS_868]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKNTNQSRTNSPSDDYSSYDQGSYGQTQGQNQNYQSSNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=513646 I6G25_RS09140 WP_041636241.1 1722046..1722564(-) (ssbA) [Macrococcoides caseolyticum strain FDAARGOS_868]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTTACTTTAGCAGTAAATAGAACATTTACTAATGCACAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTTAATAATTTCTTGCATAAAGGTAGTTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAAAGTATATGTTACTGAGGTCGTTTGTGATTCAGTTCAATTCCTTGAACCGAAGAA
CACTAATCAATCTCGTACAAACAGTCCGTCAGATGACTATTCTAGCTATGACCAAGGAAGTTATGGTCAGACACAAGGCC
AGAATCAAAACTATCAGTCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

53.977

100

0.552
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366