Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G30_RS00235 Genome accession   NZ_CP065723
Coordinates   53651..54178 (+) Length   175 a.a.
NCBI ID   WP_002833866.1    Uniprot ID   A0A0R2H8I2
Organism   Pediococcus pentosaceus strain FDAARGOS_873     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 48651..59178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G30_RS00225 (I6G30_00225) gyrA 50604..53084 (+) 2481 WP_269668170.1 DNA gyrase subunit A -
  I6G30_RS00230 (I6G30_00230) rpsF 53331..53615 (+) 285 WP_002833865.1 30S ribosomal protein S6 -
  I6G30_RS00235 (I6G30_00235) ssb 53651..54178 (+) 528 WP_002833866.1 single-stranded DNA-binding protein Machinery gene
  I6G30_RS00240 (I6G30_00240) rpsR 54202..54438 (+) 237 WP_002833867.1 30S ribosomal protein S18 -
  I6G30_RS00245 (I6G30_00245) - 54641..56641 (+) 2001 WP_002833868.1 DHH family phosphoesterase -
  I6G30_RS00250 (I6G30_00250) rplI 56647..57099 (+) 453 WP_023439730.1 50S ribosomal protein L9 -
  I6G30_RS00255 (I6G30_00255) dnaB 57148..58545 (+) 1398 WP_002833870.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19144.68 Da        Isoelectric Point: 4.7512

>NTDB_id=513531 I6G30_RS00235 WP_002833866.1 53651..54178(+) (ssb) [Pediococcus pentosaceus strain FDAARGOS_873]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=513531 I6G30_RS00235 WP_002833866.1 53651..54178(+) (ssb) [Pediococcus pentosaceus strain FDAARGOS_873]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2H8I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.582

100

0.703
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.286

100

0.623
  ssb Glaesserella parasuis strain SC1401

33.871

100

0.36
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.571

0.36