Detailed information NTG0513509

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: I6G33_RS17370
• Genome accession: NZ_CP065721
• Coordinates: 3665138..3666478 (-)
• Length: 446 a.a.
• NCBI ID: WP_077682103.1
• Uniprot ID: -
• Organism: Stutzerimonas degradans strain FDAARGOS_876
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3660138..3671478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G33_RS17360 (I6G33_17360)	-	3662208..3663803 (-)	1596	WP_102827811.1	PleD family two-component system response regulator	-
I6G33_RS17365 (I6G33_17365)	-	3664022..3665080 (+)	1059	WP_102827810.1	DUF2333 family protein	-
I6G33_RS17370 (I6G33_17370)	pilR	3665138..3666478 (-)	1341	WP_077682103.1	sigma-54 dependent transcriptional regulator	Regulator
I6G33_RS17375 (I6G33_17375)	pilS	3666600..3668192 (-)	1593	WP_102828256.1	PAS domain-containing sensor histidine kinase	Regulator
I6G33_RS17380 (I6G33_17380)	-	3668182..3668409 (-)	228	WP_102827809.1	PP0621 family protein	-
I6G33_RS17385 (I6G33_17385)	-	3668496..3669485 (-)	990	WP_008569738.1	outer membrane protein assembly factor BamD	-
I6G33_RS17390 (I6G33_17390)	rluD	3669633..3670607 (+)	975	WP_102827808.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
I6G33_RS17395 (I6G33_17395)	pgeF	3670604..3671341 (+)	738	WP_102827807.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49648.15 Da
• Isoelectric Point: 6.3299

>NTDB_id=513509 I6G33_RS17370 WP_077682103.1 3665138..3666478(-) (pilR) [Stutzerimonas degradans strain FDAARGOS_876]
MSARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEAREWLAREHYDLCLTDMRLPDGSGLELVQLIQQQHPQLPVA
MITAYGSLDTAISALKAGAFDFLTKPVDLNRLRELVSTALRVRSAPTEAAPVDSRLLGSSPPMKVLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRSERPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQVANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGGTQEVLVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIALLADA
MLRRLAQECGDSPAHLHPDALAKLLAYRFPGNVRELENMLERAYTLCDGDEIKAADLRLADSPGPGESGEVSLAQIDSLE
DHLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=513509 I6G33_RS17370 WP_077682103.1 3665138..3666478(-) (pilR) [Stutzerimonas degradans strain FDAARGOS_876]
ATGAGCGCCCGCCAGAAAGCACTGATCATCGATGACGAGCCCGACATTCGCGAACTCCTGGAAATCACCCTGGGGCGCAT
GAAGCTCGACACCCGCAGCGCCCGCAATCTCAAGGAGGCCCGCGAGTGGCTGGCGCGCGAACACTATGACCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAGCGGACTGGAGCTGGTGCAGCTCATTCAGCAACAGCACCCACAGCTGCCGGTGGCG
ATGATCACCGCCTACGGCAGCCTGGACACCGCCATCAGCGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGT
CGACCTCAACCGTCTGCGCGAGCTGGTCAGCACCGCACTGCGCGTACGCAGCGCCCCCACCGAAGCGGCACCGGTGGACA
GCCGCCTGCTCGGCAGTTCGCCGCCGATGAAGGTGCTGCGCAAGCAGATCGACAAGCTCGCCCGCAGCCAGGCGCCGGTC
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCGCGGCTGATTCACGAACAGGGGCCGCGCAGCGAGCGGCC
GTTCGTACCGGTCAACTGCGGAGCGATTCCGTCGGAGCTGATGGAGAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCA
GCGGCGCCATCGAAGACAAGCCGGGGCTGTTCCAGGTAGCCAATGGCGGCACCCTGTTCCTCGACGAAGTAGCCGACCTG
CCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCGGTTGGTGGCACTCAGGAAGTGCT
GGTCGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTCGCCAGCGAAGTCGCCGCCGGGCGCTTCCGCCAGGACCTGT
ACTACCGCCTCAACGTCATCGAACTGCGCGTGCCGCCGTTGCGCGAGCGTCGAGAAGACATCGCCCTGCTGGCCGATGCG
ATGCTGCGCCGCCTGGCGCAGGAATGCGGCGACAGCCCGGCGCACCTGCATCCCGACGCCCTGGCGAAATTGCTGGCCTA
TCGCTTTCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGACGGCGACGAGATCAAGG
CCGCGGACCTGCGCCTGGCCGACAGCCCGGGGCCGGGAGAAAGCGGAGAAGTCAGCCTGGCGCAGATCGACAGCCTGGAA
GACCACCTGGAGGAGATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAAACCCGCTGGAACCGCACCGCCGCGGCACA
GCGCCTGGGCCTGACCTTCCGCTCGATGCGTTATCGACTGAAGAAGCTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	83.559	99.552	0.832
pilR	Acinetobacter baumannii strain A118	50.109	100	0.516
luxO	Vibrio cholerae strain A1552	37.136	100	0.372