Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6G33_RS17375 Genome accession   NZ_CP065721
Coordinates   3666600..3668192 (-) Length   530 a.a.
NCBI ID   WP_102828256.1    Uniprot ID   -
Organism   Stutzerimonas degradans strain FDAARGOS_876     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3661600..3673192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G33_RS17360 (I6G33_17360) - 3662208..3663803 (-) 1596 WP_102827811.1 PleD family two-component system response regulator -
  I6G33_RS17365 (I6G33_17365) - 3664022..3665080 (+) 1059 WP_102827810.1 DUF2333 family protein -
  I6G33_RS17370 (I6G33_17370) pilR 3665138..3666478 (-) 1341 WP_077682103.1 sigma-54 dependent transcriptional regulator Regulator
  I6G33_RS17375 (I6G33_17375) pilS 3666600..3668192 (-) 1593 WP_102828256.1 PAS domain-containing sensor histidine kinase Regulator
  I6G33_RS17380 (I6G33_17380) - 3668182..3668409 (-) 228 WP_102827809.1 PP0621 family protein -
  I6G33_RS17385 (I6G33_17385) - 3668496..3669485 (-) 990 WP_008569738.1 outer membrane protein assembly factor BamD -
  I6G33_RS17390 (I6G33_17390) rluD 3669633..3670607 (+) 975 WP_102827808.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6G33_RS17395 (I6G33_17395) pgeF 3670604..3671341 (+) 738 WP_102827807.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58591.66 Da        Isoelectric Point: 8.4687

>NTDB_id=513510 I6G33_RS17375 WP_102828256.1 3666600..3668192(-) (pilS) [Stutzerimonas degradans strain FDAARGOS_876]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHDSLLQMSNPALFSNGAWLYLILNIIVSVLVQNPKRDLPVL
GLALMDVILLSGLFYFAGGTPSGIGNLLIVAVAIANILLRGRVGFFVAAVAAIGLIYLTFYLSLSKPEAARQFVQAAALG
TLCFAAALLVQGLTRRLQASEHLARQRAEDVANLEALNALILQRMRTGILVLDPQRQVLLANQGAQQLLEQPETGGMPLA
EYCPDLLNRLQQWQSNPTLRPEPLKIGQSGPIVQPSFASLQHGEKRNTLVFLEDSSHIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLHESESLDAADRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSELRNTLAPQ
QSVHLEVIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGLRHARAQVWLRLYRDPASDLPVVEVLDDGDGVATEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPGGGSCFHIVFAHASKTG

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=513510 I6G33_RS17375 WP_102828256.1 3666600..3668192(-) (pilS) [Stutzerimonas degradans strain FDAARGOS_876]
GTGGGCACTGAGAACCTGGCCTTCCTGGGCGACCAGGGCCGGCGCATCCTGCGGCTGTATCATCTTTATCGCCTGACCAT
CGGCCTGGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACGACAGCCTGCTGCAGATGAGCAATCCGGCGCTGTTCAGCA
ACGGCGCCTGGCTCTACCTGATCCTCAACATCATCGTGTCCGTGCTGGTGCAGAACCCGAAACGGGATCTGCCAGTGCTG
GGCCTGGCGCTAATGGACGTGATCCTGCTGTCGGGGCTGTTCTACTTCGCCGGCGGCACCCCCAGTGGCATCGGCAATCT
GCTGATCGTCGCCGTGGCCATCGCCAACATTCTGCTGCGCGGACGGGTCGGCTTCTTCGTCGCCGCGGTCGCGGCGATCG
GTCTGATCTATCTGACCTTCTATCTCAGCCTGAGCAAGCCAGAAGCCGCGCGCCAGTTCGTCCAGGCCGCAGCGCTGGGC
ACCCTGTGCTTTGCCGCCGCCCTGCTGGTGCAGGGCTTGACCCGCCGCCTGCAGGCCAGCGAACACCTGGCGCGTCAGCG
GGCCGAGGATGTCGCCAACCTGGAGGCATTGAACGCGCTGATTCTGCAACGCATGCGCACCGGCATCCTGGTCCTCGATC
CGCAACGACAAGTGCTGCTGGCCAATCAGGGCGCGCAACAGCTGCTCGAGCAACCGGAGACCGGCGGAATGCCGCTCGCC
GAATACTGCCCGGACCTGCTGAATCGTCTGCAGCAATGGCAAAGCAACCCGACCCTGCGCCCGGAGCCGCTGAAGATCGG
CCAGAGCGGCCCGATCGTGCAGCCGAGTTTCGCCTCGCTGCAGCACGGCGAGAAACGCAACACGCTGGTGTTTCTCGAGG
ACAGCTCGCACATCGCGCAGAAGGCCCAGCAGCTCAAGCTCGCCTCGCTCGGCCGACTGACCGCCAGCATCGCCCACGAA
ATCCGCAACCCGCTTGGTGCCATCAGCCACGCGGCGCAGCTGCTGCACGAATCCGAATCCCTGGATGCTGCGGACCGGCG
TCTGGCGCAGATCATCCAGGATCATTCGCGACGCATGAACCTGGTCATCGAGAACGTCCTGCAGCTCTCGCGCCGACGCC
AGGCCGAACCGCAGCTACTGGATCTCAAGTACTGGCTGCACCGCTTCGTCAGCGAGCTGCGCAACACCCTGGCACCACAG
CAGAGCGTGCACCTGGAAGTCATCGGCAGCTCCCTGCAGACACGCATGGACCCCAACCAGCTCACCCAGGTGCTGACCAA
CCTCGTGCAGAACGGCCTGCGCTACAGCGGCTTGCGCCATGCCCGCGCCCAGGTATGGTTGCGCCTGTATCGCGACCCGG
CCAGCGACCTGCCGGTGGTTGAAGTCCTCGACGATGGCGACGGAGTGGCCACCGAGCAGCTGCAGAACATTTTCGAACCC
TTCTTCACCACCGAGAGCAAGGGTACCGGGCTGGGCCTGTATATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCACGCCT
GGATTACCGCGAGCGCCCGGGGGGTGGCAGCTGCTTTCATATCGTCTTTGCGCATGCGAGCAAGACCGGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.394

99.623

0.642