Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G34_RS08895 Genome accession   NZ_CP065720
Coordinates   1904909..1905400 (+) Length   163 a.a.
NCBI ID   WP_003281797.1    Uniprot ID   A0A210XTT8
Organism   Stutzerimonas frequens strain FDAARGOS_877     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1899909..1910400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G34_RS08885 (I6G34_08885) uvrA 1900410..1903247 (-) 2838 WP_102840422.1 excinuclease ABC subunit UvrA -
  I6G34_RS08890 (I6G34_08890) - 1903379..1904746 (+) 1368 WP_102840423.1 MFS transporter -
  I6G34_RS08895 (I6G34_08895) ssb 1904909..1905400 (+) 492 WP_003281797.1 single-stranded DNA-binding protein Machinery gene
  I6G34_RS08900 (I6G34_08900) - 1905412..1906296 (+) 885 WP_102840424.1 sugar nucleotide-binding protein -
  I6G34_RS08905 (I6G34_08905) - 1906289..1907218 (+) 930 WP_102840425.1 NAD-dependent epimerase/dehydratase family protein -
  I6G34_RS08910 (I6G34_08910) - 1907287..1907985 (-) 699 WP_102840426.1 OmpW family protein -
  I6G34_RS08915 (I6G34_08915) - 1908170..1908955 (+) 786 WP_102840427.1 DUF3450 domain-containing protein -
  I6G34_RS08920 (I6G34_08920) - 1908952..1910298 (+) 1347 WP_102840428.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18314.38 Da        Isoelectric Point: 5.9492

>NTDB_id=513462 I6G34_RS08895 WP_003281797.1 1904909..1905400(+) (ssb) [Stutzerimonas frequens strain FDAARGOS_877]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=513462 I6G34_RS08895 WP_003281797.1 1904909..1905400(+) (ssb) [Stutzerimonas frequens strain FDAARGOS_877]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAAGACAAGCAGACCGGTCAGCTGCAAGAGCGCACCGAGT
GGCACCGTGTAGTGCTGTTCGGCAAGGTCGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGGTCGCAGTGCTACATCGAA
GGTCGCCTGCAGACGCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTATACCACCGAGATCGTCGTTGACATGAACGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGTAGCTCCGATGACGCACCACGCCAGCCGCGTCCGCAGCGCGAGCCGCAGCAGG
CCCCGCGTCAGCAGGCTCAGCCGCAGCAGCCTGCTGCCCGGCAGCAGCCCGCGCCGGACTATGACAGCTTCGACGACGAC
ATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210XTT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.515
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.509
  ssb Neisseria meningitidis MC58

46.591

100

0.503