Detailed information NTG0513449

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: I6G34_RS02055
• Genome accession: NZ_CP065720
• Coordinates: 449292..450629 (+)
• Length: 445 a.a.
• NCBI ID: WP_102838686.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain FDAARGOS_877
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 444292..455629

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G34_RS02030 (I6G34_02030)	pgeF	444324..445061 (-)	738	WP_102838683.1	peptidoglycan editing factor PgeF	-
I6G34_RS02035 (I6G34_02035)	rluD	445058..446032 (-)	975	WP_063541901.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
I6G34_RS02040 (I6G34_02040)	-	446236..447225 (+)	990	WP_102838684.1	outer membrane protein assembly factor BamD	-
I6G34_RS02045 (I6G34_02045)	-	447346..447579 (+)	234	WP_102838685.1	PP0621 family protein	-
I6G34_RS02050 (I6G34_02050)	pilS	447569..449164 (+)	1596	WP_063541895.1	PAS domain-containing sensor histidine kinase	Regulator
I6G34_RS02055 (I6G34_02055)	pilR	449292..450629 (+)	1338	WP_102838686.1	sigma-54 dependent transcriptional regulator	Regulator
I6G34_RS02060 (I6G34_02060)	-	450715..451770 (-)	1056	WP_063541891.1	DUF2333 family protein	-
I6G34_RS02065 (I6G34_02065)	-	451985..453580 (+)	1596	WP_102838687.1	PleD family two-component system response regulator	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49524.94 Da
• Isoelectric Point: 6.4113

>NTDB_id=513449 I6G34_RS02055 WP_102838686.1 449292..450629(+) (pilR) [Stutzerimonas frequens strain FDAARGOS_877]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLDLVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAESPVDNRLLGSSPPMKVLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSDKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADAM
LRRLAQECGDSSARLHPDALAKLENYRFPGNVRELENMLERAYTLCEDDEIKAGDLRLADSPGLSENGEASLAQIANLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=513449 I6G34_RS02055 WP_102838686.1 449292..450629(+) (pilR) [Stutzerimonas frequens strain FDAARGOS_877]
ATGACCGCGCGCCAGAAAGCACTGATCATCGATGACGAGCCCGATATCCGCGAGTTGCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGATACCCGCAGCGCCCGCAACCTCAAGGAAGCGCGCGAGTGCCTGGCACGCGAGCACTATGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAGCGGCTTGGATCTGGTGCAGTACATCCAGCAGCAGCATCCACAACTGCCGGTCGCG
ATGATCACCGCCTATGGCAGTCTCGACACAGCCATTGGCGCCCTGAAGGCCGGCGCTTTCGATTTTCTGACCAAGCCTGT
GGACCTCAACCGCCTTCGCGAACTCGTCAGCACCGCCTTACGGCTGCGCGCACCGGCGGCCGAATCGCCAGTGGACAATC
GCCTGCTCGGCAGTTCGCCGCCGATGAAGGTCCTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCGGTCTAT
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCCCGCCTGATCCACGAACAGGGCCCACGCAGCGACAAGCCCTT
CGTCCCGGTCAACTGCGGCGCGATCCCTTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCAGTG
GCGCCATCGAGGACAAACCCGGACTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGACGAAGTGGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTACGCGCGGTCGGCGGTGCGCAGGAAGTAATGGT
AGACGTCCGCATCCTCTGTGCCACCCACAAGGATCTGGCCAGCGAAGTGGCCGCAGGCCGCTTCCGCCAGGACCTGTATT
ACCGACTGAACGTCATCGAACTGCGTGTGCCGCCACTACGCGAGCGCCGTGAAGACATCGGCCTGCTCGCCGATGCCATG
CTGCGCCGGCTGGCACAGGAATGCGGCGACAGCAGTGCCCGGCTGCATCCTGATGCCCTGGCGAAGCTGGAAAACTATCG
TTTCCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAGCGGGCTTACACGCTCTGTGAAGACGACGAGATCAAGGCCG
GCGACCTGCGTCTAGCCGACAGCCCGGGTCTGTCGGAGAACGGCGAAGCCAGTCTGGCGCAGATCGCTAACCTGGAAGAC
CACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCCCTTGAGGAAACCCGCTGGAACCGCACCGCGGCAGCCCAGCG
GCTTGGCCTGACCTTCCGCTCGATGCGCTACCGGCTGAAAAAGCTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	86.036	99.775	0.858
pilR	Acinetobacter baumannii strain A118	50.327	100	0.519
luxO	Vibrio cholerae strain A1552	38.479	100	0.387