Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6G34_RS02050 Genome accession   NZ_CP065720
Coordinates   447569..449164 (+) Length   531 a.a.
NCBI ID   WP_063541895.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain FDAARGOS_877     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 442569..454164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G34_RS02030 (I6G34_02030) pgeF 444324..445061 (-) 738 WP_102838683.1 peptidoglycan editing factor PgeF -
  I6G34_RS02035 (I6G34_02035) rluD 445058..446032 (-) 975 WP_063541901.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6G34_RS02040 (I6G34_02040) - 446236..447225 (+) 990 WP_102838684.1 outer membrane protein assembly factor BamD -
  I6G34_RS02045 (I6G34_02045) - 447346..447579 (+) 234 WP_102838685.1 PP0621 family protein -
  I6G34_RS02050 (I6G34_02050) pilS 447569..449164 (+) 1596 WP_063541895.1 PAS domain-containing sensor histidine kinase Regulator
  I6G34_RS02055 (I6G34_02055) pilR 449292..450629 (+) 1338 WP_102838686.1 sigma-54 dependent transcriptional regulator Regulator
  I6G34_RS02060 (I6G34_02060) - 450715..451770 (-) 1056 WP_063541891.1 DUF2333 family protein -
  I6G34_RS02065 (I6G34_02065) - 451985..453580 (+) 1596 WP_102838687.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58881.93 Da        Isoelectric Point: 8.1622

>NTDB_id=513448 I6G34_RS02050 WP_063541895.1 447569..449164(+) (pilS) [Stutzerimonas frequens strain FDAARGOS_877]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIVVAVLVQNPARDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIIAVAIANILLRGRIGFFVAAVAAIGLIYLTFYLSISRPEASSQYVQAAALG
TLCFAAAFLVQGLTRRLQASENLARQRAEDVANLEALNALILQRMRTGIMVLGPQERVLLANQGALQLLGQDESLTGERL
APRCPELLKALQQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAH
EIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLTP
QQTVHVETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHSQAQVWLRLFRDEQSDLPIVEVLDDGPGIAADQLHNVFE
PFFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=513448 I6G34_RS02050 WP_063541895.1 447569..449164(+) (pilS) [Stutzerimonas frequens strain FDAARGOS_877]
GTGGGCACTGAGAACCTCGCTTTTCTCGGCGATCAGGGGCGACGCATCCTCCGCCTGTATCACCTCTATCGCCTGACAAT
CGGCCTGGCACTGGTGCTGCTGATAAGCAGTGACCTGCACAACGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGTGCCTGGCTTTATCTGATCCTGAACATCGTGGTCGCCGTGCTGGTGCAGAACCCTGCGCGTGACCTGCCTGTGCTC
GGCCTGGCACTGATGGACGTGATCCTGCTGTCCGGCCTGTTCTATTTCGGTGGAGGCACGCCGAGTGGAATCGGCAATCT
GCTGATCATTGCCGTCGCCATCGCCAACATCCTGCTGCGCGGGCGCATCGGGTTCTTCGTTGCCGCCGTGGCAGCGATTG
GCCTGATCTACCTGACCTTCTATCTCAGCATCAGCCGGCCTGAAGCCAGCAGTCAGTATGTCCAGGCCGCCGCGCTCGGC
ACCCTCTGTTTCGCTGCCGCGTTTCTCGTGCAAGGCCTCACGCGGCGCCTGCAGGCGAGCGAAAATCTGGCACGCCAGCG
CGCCGAGGACGTCGCCAACCTCGAAGCACTCAACGCGCTTATCCTGCAGCGCATGCGCACCGGCATCATGGTGCTGGGCC
CCCAGGAACGCGTGCTGCTGGCCAACCAGGGCGCGCTGCAGCTACTCGGCCAGGACGAGTCGCTGACCGGCGAGCGTCTT
GCCCCGCGCTGCCCGGAGTTGCTCAAAGCCCTGCAACAATGGCGCGGCAATCCCACCCTGCGCCCGCAGAATCTCAAGGC
AACGCCGGGGGGCCCGACGCTCCAGCCGAGCTTCGCCGCCCTGCAACACGGCAACAAGCTCGACACCCTGGTCTTTCTCG
AGGACATCTCGCAGATCGCGCAGAAAGCGCAGCAGCTCAAGCTCGCATCTCTCGGACGACTCACCGCCAGCATTGCCCAC
GAGATACGCAACCCGCTGGGCGCCATCAGCCATGCCGCACAGCTGCTTCAGGAGTCCGAGGAGCTGGACGGCCCGGACCG
CCGCCTGGCGCAGATCATTCAGGACCACTCTCGGCGCATGAACCTGGTCATCGAGAACGTCCTGCAACTCTCGCGACGCC
GACAGGCCGAGCCACAGTTGCTGGACCTCAAGTACTGGCTGCATCGCTTCGCGAGCGAGTTCCGCCAAGGCCTGACCCCA
CAACAGACGGTGCATGTGGAAACGATCGGCAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGTGGGCAGCAGCATTCGCAGGCGCAGGTCTGGCTGCGACTTTTCCGCGACG
AGCAGAGCGATCTGCCGATCGTCGAGGTGCTCGATGACGGTCCCGGCATTGCTGCCGACCAACTGCACAACGTGTTCGAG
CCGTTCTTCACCACCGAGAGCAAGGGCACCGGCCTGGGGCTTTACATCTCGCGAGAACTTTGCGAAAGCAATCAGGCTCG
ACTGGATTATCGCGAACGGCCCGAAGGCGGTAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGTAAGCTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)

PAS domain (PAS_8)

(202-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.725

100

0.657