Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   Y1U_RS06860 Genome accession   NC_017927
Coordinates   1312661..1313587 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus MN-ZLW-002     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307661..1318587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y1U_RS06830 (Y1U_C1337) - 1307738..1308532 (-) 795 WP_014727618.1 HAD-IIB family hydrolase -
  Y1U_RS06835 (Y1U_C1338) - 1308717..1309094 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  Y1U_RS06840 (Y1U_C1339) - 1309099..1309797 (+) 699 WP_014727619.1 ABC transporter ATP-binding protein -
  Y1U_RS06845 (Y1U_C1340) - 1309809..1310594 (+) 786 WP_014727620.1 hypothetical protein -
  Y1U_RS06850 (Y1U_C1341) amiF 1310644..1311573 (-) 930 WP_014727621.1 ATP-binding cassette domain-containing protein Regulator
  Y1U_RS06855 (Y1U_C1342) amiE 1311566..1312651 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  Y1U_RS06860 (Y1U_C1343) amiD 1312661..1313587 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  Y1U_RS06865 (Y1U_C1344) amiC 1313587..1315080 (-) 1494 WP_014608541.1 ABC transporter permease Regulator
  Y1U_RS06870 (Y1U_C1345) amiA 1315142..1317109 (-) 1968 WP_014621802.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=51337 Y1U_RS06860 WP_002946409.1 1312661..1313587(-) (amiD) [Streptococcus thermophilus MN-ZLW-002]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=51337 Y1U_RS06860 WP_002946409.1 1312661..1313587(-) (amiD) [Streptococcus thermophilus MN-ZLW-002]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964

Multiple sequence alignment