Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   I6G43_RS01980 Genome accession   NZ_CP065706
Coordinates   404531..405154 (+) Length   207 a.a.
NCBI ID   WP_009014110.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 399531..410154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS01975 (I6G43_01975) rpoC 400661..404326 (+) 3666 WP_000228787.1 DNA-directed RNA polymerase subunit beta' -
  I6G43_RS01980 (I6G43_01980) comM 404531..405154 (+) 624 WP_009014110.1 hypothetical protein Regulator
  I6G43_RS01985 (I6G43_01985) tsaE 405258..405701 (+) 444 WP_000288226.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  I6G43_RS01990 (I6G43_01990) - 405691..406212 (+) 522 WP_000455526.1 GNAT family N-acetyltransferase -
  I6G43_RS01995 (I6G43_01995) brpA 406217..407251 (+) 1035 WP_009014109.1 biofilm formation/cell division transcriptional regulator BrpA -
  I6G43_RS02000 (I6G43_02000) cinA 407324..408580 (+) 1257 WP_000642699.1 competence/damage-inducible protein A Machinery gene
  I6G43_RS02005 (I6G43_02005) recA 408635..409783 (+) 1149 WP_038806436.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23571.60 Da        Isoelectric Point: 10.1326

>NTDB_id=513200 I6G43_RS01980 WP_009014110.1 404531..405154(+) (comM) [Streptococcus oralis strain FDAARGOS_886]
MIKSIRILLLLALIQISLSSCLLWKGAILTLKQSSAYFLVFIVLASGLCAGMNFFYTRDQNVHSIINSQKKVKLFYSILL
VLNLVGVCLVLSETILTQTAVQQELVDLFLPSFFFLFGIDLLVFLPLEKYSRDLGNTLNKKKTVVLTVLATLLFLRNPMT
VLSIVFYVGLGFIFARFLFPKSMRREFSFYGHVIRDILLVSVMCIFF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=513200 I6G43_RS01980 WP_009014110.1 404531..405154(+) (comM) [Streptococcus oralis strain FDAARGOS_886]
ATGATAAAATCAATTCGCATCTTATTGTTGCTGGCTTTGATCCAGATTAGTCTGAGTAGCTGTTTACTGTGGAAGGGAGC
CATCTTAACCTTAAAGCAATCAAGCGCCTATTTTCTAGTGTTTATCGTATTGGCATCAGGTCTGTGCGCAGGGATGAATT
TCTTTTATACTCGAGATCAGAATGTTCATAGCATTATAAACAGTCAGAAAAAAGTGAAACTATTTTATAGTATCTTGTTG
GTTTTAAACCTAGTAGGCGTCTGTCTGGTGTTGTCGGAGACTATTTTAACACAGACAGCTGTTCAGCAAGAGTTGGTAGA
TCTTTTCTTGCCTTCCTTCTTTTTCTTGTTTGGGATTGATTTACTTGTCTTTTTACCGCTTGAAAAATACAGCCGAGATT
TGGGAAACACTCTCAATAAGAAAAAAACAGTTGTCCTGACAGTTCTCGCAACCTTGCTGTTCTTGAGAAATCCAATGACA
GTTTTATCCATTGTTTTTTATGTTGGTTTAGGCTTCATTTTTGCTCGGTTTTTATTTCCAAAATCTATGAGAAGAGAATT
TTCCTTTTACGGTCACGTAATCCGAGATATTTTACTTGTTAGCGTCATGTGTATATTTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

61.165

99.517

0.609
  comM Streptococcus pneumoniae R6

61.165

99.517

0.609
  comM Streptococcus pneumoniae TIGR4

61.165

99.517

0.609
  comM Streptococcus mitis NCTC 12261

44.162

95.169

0.42
  comM Streptococcus mitis SK321

43.655

95.169

0.415