Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   I6G50_RS00670 Genome accession   NZ_CP065691
Coordinates   106532..108742 (+) Length   736 a.a.
NCBI ID   WP_197908869.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101532..113742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS00650 (I6G50_00650) - 102283..102624 (-) 342 WP_197908867.1 MmcQ/YjbR family DNA-binding protein -
  I6G50_RS00655 (I6G50_00655) - 102876..104432 (+) 1557 WP_003135082.1 ABC-F family ATP-binding cassette domain-containing protein -
  I6G50_RS00660 (I6G50_00660) - 104617..105792 (+) 1176 WP_003135080.1 SLC13 family permease -
  I6G50_RS00665 (I6G50_00665) - 105875..106516 (+) 642 WP_197908868.1 helix-hairpin-helix domain-containing protein -
  I6G50_RS00670 (I6G50_00670) comEC 106532..108742 (+) 2211 WP_197908869.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I6G50_RS00675 (I6G50_00675) - 108900..109676 (+) 777 WP_197908870.1 alpha/beta hydrolase -
  I6G50_RS00680 (I6G50_00680) - 109851..110066 (+) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  I6G50_RS00685 (I6G50_00685) atpB 110120..110833 (+) 714 WP_003135072.1 F0F1 ATP synthase subunit A -
  I6G50_RS00690 (I6G50_00690) atpF 110847..111353 (+) 507 WP_003135070.1 F0F1 ATP synthase subunit B -
  I6G50_RS00695 (I6G50_00695) - 111368..111895 (+) 528 WP_003135069.1 F0F1 ATP synthase subunit delta -
  I6G50_RS00700 (I6G50_00700) atpA 111967..113475 (+) 1509 WP_003135068.1 F0F1 ATP synthase subunit alpha -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 85318.24 Da        Isoelectric Point: 9.7981

>NTDB_id=512998 I6G50_RS00670 WP_197908869.1 106532..108742(+) (comEC) [Lactococcus garvieae strain FDAARGOS_893]
MNQKFPLIYLIYLLTFLYFLVFSFSWALLMITMASIALVFYRKYYSLLIVLACFTVFFYMVKQIEEVKENKQVEKISTIK
PYIDTLEVNGSRLSFRGRTDGQDYQLFYNFKNKEEQDFFKKLDYNLIIYFQGGLEEAEGQSNFSGFNYKQYMKNQGIYRL
IQIEDIQGYKRLSGFDLRLYRRKAILWAQAHFPTPMSSYMTGLLFGWLDKDFEEMGDIYTSLGIIHLFALSGMQVNFFIA
LLRKLLLRLGILQETLIFIQIPFSIFYAFMTGLSVSILRALLQKNIPMKRTMDKFSVTFLLLLLFMPQFLLTTGGQLTML
YSFLLSFLSGKFSHLKGIKKTVMESTVLSVGVLPLLIFHFHSFQPLSIFLTLFFSLIFDFLLLPGLLLVFILSFLGFDFA
FLNNFFLHLEEIIKVVNSLFQYPLVLGKPEFIFLVVLFICSGLFIDFYRKKVWNTIIALILLLLFFIVKNPRQASITMID
VGQGDSILLQDKWSRRNILIDTGGKLRWASDESWKLTSYKSNAERTLIPYLKSRGIGTIDSLILTHPDEDHVGDLEILAQ
KLKIKHIYISQSSLEKKSFAKRLTKLKSQIHIVKTGDKLPIFDSQLYFLSAGLEGEGSNNNSLVTYGTFYKTKFLFTGDL
EEEGEQYLQRNYPHLQADVLKVGHHGSKSSSKPEFLQTLNPKIALISVGKNNRYKHPSQETLDNLSSEKIKVYRTDQQGA
IRLIQENNVWKIQTVK

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=512998 I6G50_RS00670 WP_197908869.1 106532..108742(+) (comEC) [Lactococcus garvieae strain FDAARGOS_893]
ATGAATCAAAAATTTCCTCTTATTTATTTGATTTATCTGTTAACTTTTTTATATTTTCTTGTTTTTAGTTTTTCTTGGGC
TTTGTTAATGATAACTATGGCGAGTATAGCCCTCGTTTTTTATCGTAAATATTATTCTCTCCTTATTGTTTTAGCTTGCT
TTACTGTCTTTTTTTATATGGTTAAGCAAATAGAGGAAGTAAAGGAAAACAAGCAAGTAGAGAAAATATCTACAATTAAA
CCTTATATAGACACACTTGAAGTCAATGGTAGCCGTTTAAGTTTTAGAGGAAGAACAGATGGACAAGATTATCAGCTTTT
TTATAATTTCAAGAATAAAGAAGAACAAGATTTTTTTAAAAAGCTAGACTATAATCTTATCATTTACTTTCAGGGTGGAT
TGGAGGAGGCAGAGGGACAAAGTAATTTTTCGGGCTTTAATTATAAGCAATATATGAAAAATCAAGGGATTTATAGACTT
ATCCAGATTGAAGATATTCAGGGGTATAAGCGTTTATCCGGCTTTGATTTACGACTTTATCGCAGAAAAGCTATTCTCTG
GGCACAAGCACATTTCCCCACACCTATGTCTTCTTATATGACGGGCTTACTTTTTGGCTGGTTAGATAAGGATTTTGAAG
AGATGGGAGATATTTATACAAGTTTAGGTATTATTCATCTTTTTGCCCTTTCAGGAATGCAGGTTAATTTTTTTATTGCA
CTCCTTCGTAAGCTACTACTCAGATTAGGTATACTGCAAGAGACTCTCATTTTTATCCAAATACCTTTTTCCATTTTCTA
TGCTTTTATGACAGGTTTATCGGTATCAATTTTACGGGCCCTTTTACAAAAAAATATTCCGATGAAAAGGACAATGGATA
AATTTTCTGTTACCTTTCTTCTTTTACTCTTGTTTATGCCCCAATTTTTACTGACAACTGGGGGCCAGCTAACCATGCTT
TACTCCTTTTTATTATCTTTTCTTTCAGGAAAGTTTAGCCATCTAAAGGGGATAAAAAAGACAGTAATGGAATCCACAGT
CTTATCAGTAGGTGTTTTACCTCTTTTAATTTTTCATTTTCATAGTTTTCAACCTCTATCTATTTTTTTAACCCTGTTTT
TCAGTTTAATTTTCGATTTTTTGTTACTGCCAGGCTTACTTCTAGTTTTTATCCTTTCATTTTTGGGGTTTGATTTTGCT
TTTCTCAACAACTTTTTTCTACATTTAGAAGAAATTATAAAAGTTGTGAACAGTCTTTTTCAGTATCCACTTGTATTAGG
AAAACCAGAATTTATCTTTTTAGTTGTCCTTTTCATATGTAGCGGACTTTTCATTGACTTTTATAGAAAAAAAGTGTGGA
ATACAATCATCGCACTAATTCTGCTTCTTTTATTTTTTATTGTGAAAAATCCTCGACAAGCAAGTATCACCATGATAGAT
GTTGGCCAAGGAGACAGCATACTGCTACAAGACAAATGGAGCCGTCGTAATATTTTAATCGACACGGGAGGAAAACTAAG
ATGGGCTTCAGATGAAAGCTGGAAACTTACTTCATATAAAAGTAATGCTGAGAGAACACTGATTCCTTATCTTAAGTCAC
GTGGAATTGGTACAATAGATTCATTGATTTTGACACATCCCGATGAAGACCATGTCGGTGATTTAGAGATTCTAGCTCAA
AAGTTGAAGATAAAGCATATTTATATTTCTCAATCATCTTTAGAAAAAAAGAGCTTCGCTAAAAGATTAACCAAGTTAAA
AAGTCAGATTCACATTGTTAAGACAGGAGATAAGTTGCCTATTTTTGATAGCCAGCTTTACTTTTTATCCGCAGGACTTG
AAGGAGAAGGTAGCAACAATAACTCATTAGTGACCTATGGTACTTTTTACAAGACGAAATTTTTATTTACAGGAGATCTG
GAAGAGGAGGGGGAGCAATATTTGCAAAGAAACTACCCACACCTGCAGGCAGATGTATTGAAAGTTGGACACCATGGAAG
TAAGAGCTCCTCAAAGCCTGAGTTTTTACAAACACTTAATCCTAAAATTGCCCTCATTTCTGTGGGGAAGAATAATCGAT
ACAAGCATCCTAGTCAGGAGACTTTGGATAACTTGTCTTCGGAAAAAATTAAAGTTTATCGTACTGATCAACAAGGGGCA
ATTCGCTTAATTCAAGAAAATAATGTTTGGAAAATCCAAACGGTTAAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(203-445)

Metallo-beta-lactamase superfamily (Lactamase_B)

(481-689)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

53.888

99.592

0.537
  comEC/celB Streptococcus mitis SK321

44.118

100

0.448
  comEC/celB Streptococcus pneumoniae TIGR4

43.834

100

0.444
  comEC/celB Streptococcus mitis NCTC 12261

43.758

100

0.443
  comEC/celB Streptococcus pneumoniae D39

43.566

100

0.442
  comEC/celB Streptococcus pneumoniae Rx1

43.566

100

0.442
  comEC/celB Streptococcus pneumoniae R6

43.566

100

0.442